Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 136 7e-27
>seq16976
Length=50896
Score = 136 bits (150), Expect = 7e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| || | || || ||||| || || |||||||| || || || || || |
Sbjct 49764 AGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 49823
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||||| |||||| || ||||| || | || || || || || ||||||||||||
Sbjct 49824 CCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCC 49883
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || || || ||||| || ||| |||||||| | || || || | ||||
Sbjct 49884 TTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 49943
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || || |||||||| || || ||||||||
Sbjct 49944 ATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981
Score = 132 bits (146), Expect = 9e-26
Identities = 155/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| || || || || || | ||||||||||
Sbjct 50230 CAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTA 50289
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| || ||||| || | || || || || || ||||||||||||||||| || |
Sbjct 50290 GCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 50349
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
| || ||||| || ||| |||||||| | || || || | |||||| || || |
Sbjct 50350 TTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGC 50409
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || |||||||| || || ||||||||
Sbjct 50410 CTGTCAGGGTCTTCACAAAGATCTGCAT 50437
Score = 131 bits (144), Expect = 3e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|||| || | ||| || || || || || |||||||| || || || || || | |||
Sbjct 49995 CGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 50054
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
||||| | |||||| || ||||| || | || || || || || |||||||||||||||
Sbjct 50055 TCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTG 50114
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
|| || || || ||||| || ||| |||||||| | || || || | |||||||
Sbjct 50115 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 50174
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || |||||||| || || ||||||||
Sbjct 50175 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|||| || | ||| || || || || || |||||||| || || || || || | |||
Sbjct 50451 CGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 50510
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
||||| | |||||| || ||||| || | || || || || || |||||||||||||||
Sbjct 50511 TCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTG 50570
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
|| || || || ||||| || ||| |||||||| | || || || | ||| |||
Sbjct 50571 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATG 50630
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || | |||||| || || ||||||||
Sbjct 50631 GTCTTGCCAGTCATGGTCTTCACAAAGATCTGCAT 50665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921006168702520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |