Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq16976 91.5 1e-13 >seq16976 Length=50896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || || || || |||||| || || || ||| Sbjct 50013 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 50072 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || ||||||||||| ||||| || || || Sbjct 50073 GCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 50132 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 50133 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 50192 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 50193 TTCACAAAGATCTGCATG 50210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || |||||| || || || ||| Sbjct 49785 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCA 49844 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || ||||||||||| ||||| || || || Sbjct 49845 GCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 49904 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 49905 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTGTCAGGGTC 49964 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 49965 TTCACAAAGATCTGCATG 49982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || |||||| || || || ||| Sbjct 50241 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCA 50300 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || ||||||||||| ||||| || || || Sbjct 50301 GCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 50360 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 50361 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTGTCAGGGTC 50420 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 50421 TTCACAAAGATCTGCATG 50438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || || || || |||||| || || || ||| Sbjct 50469 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 50528 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || ||||||||||| ||||| || || || Sbjct 50529 GCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 50588 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| |||| || Sbjct 50589 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTCTTGCCAGTCATGGTC 50648 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 50649 TTCACAAAGATCTGCATG 50666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419860505325492