Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 120 3e-22
>seq16976
Length=50896
Score = 120 bits (132), Expect = 3e-22
Identities = 158/218 (72%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || |||| || ||||| || || |||||||| || | | |||||| | |||
Sbjct 50454 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50513
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || |||||| || || ||||| ||||| || ||
Sbjct 50514 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50573
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || |||| || || || || | |||| ||||
Sbjct 50574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTC 50633
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAA 64448
||||| |||| || || || || || ||||| |||||
Sbjct 50634 TTGCCAGTCATGGTCTTCACAAAGATCTGCATGTTTAA 50671
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||||| || ||||| || || |||||||| || | | |||||| | |||
Sbjct 49770 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49829
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || |||||| || || ||||| ||||| || ||
Sbjct 49830 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 49889
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || |||| || || || || | || | |||
Sbjct 49890 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTC 49949
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 49950 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || |||| || ||||| || || |||||||| || | | |||||| | |||
Sbjct 49998 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50057
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || |||||| || || ||||| ||||| || ||
Sbjct 50058 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50117
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 50118 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 50177
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 50178 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||||| || ||||| || || |||||||| || | | |||||| | |||
Sbjct 50226 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50285
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || | || |||||| || || ||||| ||||| || ||
Sbjct 50286 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50345
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || |||| || || || || | || | |||
Sbjct 50346 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTC 50405
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 50406 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499310718750040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |