Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq13374 159 5e-34
seq9450 105 1e-17
>seq13374
Length=24841
Score = 159 bits (176), Expect = 5e-34
Identities = 213/296 (72%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||||||| || ||||| ||| | || ||||
Sbjct 19273 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 19332
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || ||||||||||| || ||||||||| | ||||
Sbjct 19333 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 19392
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
||||||| | || |||| || ||||||| ||| |||||||| || | ||| | ||
Sbjct 19393 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 19452
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||||||||| || || || || || |||| || ||| | || || || |
Sbjct 19453 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 19512
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| |||| ||| ||||| || |||||| || || || || || || || |||
Sbjct 19513 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 19568
Score = 141 bits (156), Expect = 1e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| ||||| || | |||||| ||| |||| || || || || ||||| || | ||| |||
Sbjct 21308 GTTGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATATCACAG 21367
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|||| ||||||||| ||||||||||| || || |||||||| || || || || ||||||
Sbjct 21368 ACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCA 21427
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
||||| || | ||| || | ||| ||| | || || || | || | || | |||
Sbjct 21428 AACACCTCCTGCCCGACCGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGGTAGATCATC 21487
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| |||| || || || || || || ||||||||||| || ||||| | |||
Sbjct 21488 TCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCATCAATCATCTG 21540
Score = 102 bits (112), Expect = 1e-16
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
|| || |||||||| | ||| || | | || |||| | ||| ||| | |||
Sbjct 20089 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 20148
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| || | |||||| |||| || || ||||| ||||| || ||||||||||||
Sbjct 20149 TCAGGCAGAAGCGGGTGCCAGTGGTATAGAGTGTTGAATTCGGCTGCAATTCGGTTCTGG 20208
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| |
Sbjct 20209 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 20266
Query 9671 CGCTGAGTTGCTGGACATA 9689
|||| | ||||| |||||
Sbjct 20267 CGCTTAAGTGCTGCACATA 20285
>seq9450
Length=17847
Score = 105 bits (116), Expect = 1e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
|| ||||| || ||||||||||||||| | || ||||||||| ||| | | |||||
Sbjct 4819 CCACCGAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAGCCCC 4760
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|||| |||||||||||| || | ||| | ||||| ||||| || || || ||| |
Sbjct 4759 TTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCACCAAAAATACCATTGGGTTGG 4700
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
||||| || | | ||||| || | || | ||| || | ||| ||||| || ||
Sbjct 4699 GGTTTCTCAAGCAACAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 4640
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||| ||| || || |||| | ||| ||| ||
Sbjct 4639 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 4607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723244088319400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |