Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq13374 159 5e-34 seq9450 105 1e-17 >seq13374 Length=24841 Score = 159 bits (176), Expect = 5e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || |||| Sbjct 19273 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 19332 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 19333 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 19392 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| ||| |||||||| || | ||| | || Sbjct 19393 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 19452 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || || || |||| || ||| | || || || | Sbjct 19453 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAGCTCCA 19512 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| |||| ||| ||||| || |||||| || || || || || || || ||| Sbjct 19513 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 19568 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | |||||| ||| |||| || || || || ||||| || | ||| ||| Sbjct 21308 GTTGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATATCACAG 21367 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| ||||||||||| || || |||||||| || || || || |||||| Sbjct 21368 ACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCA 21427 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| ||| | || || || | || | || | ||| Sbjct 21428 AACACCTCCTGCCCGACCGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGGTAGATCATC 21487 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || ||||||||||| || ||||| | ||| Sbjct 21488 TCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCATCAATCATCTG 21540 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 20089 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 20148 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || || ||||| ||||| || |||||||||||| Sbjct 20149 TCAGGCAGAAGCGGGTGCCAGTGGTATAGAGTGTTGAATTCGGCTGCAATTCGGTTCTGG 20208 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 20209 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 20266 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| | ||||| ||||| Sbjct 20267 CGCTTAAGTGCTGCACATA 20285 >seq9450 Length=17847 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| | || ||||||||| ||| | | ||||| Sbjct 4819 CCACCGAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAGCCCC 4760 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| ||||| || || || ||| | Sbjct 4759 TTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCACCAAAAATACCATTGGGTTGG 4700 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 4699 GGTTTCTCAAGCAACAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 4640 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 4639 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 4607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723244088319400