Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq12342 105 3e-17 seq46499 89.7 2e-12 >seq12342 Length=2830 Score = 105 bits (116), Expect = 3e-17 Identities = 278/419 (66%), Gaps = 9/419 (2%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | ||||| || || || || Sbjct 771 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAAACCTTCTTCCCAGAGGAG 830 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 831 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAA 889 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || ||||| || ||||| |||||||| | || || || || || Sbjct 890 GGTGCAGAATGCTGTCATCACTGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCAC 949 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || |||| | ||||| | || ||||| || || || ||||| Sbjct 950 CAAAGATGCCGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGC 1009 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | | ||| || ||| | Sbjct 1010 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTG 1067 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | ||||| || || || || ||| ||| || | ||| | ||||| ||||| Sbjct 1068 CTGATCTTTGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGC 1127 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || ||||| || || || || |||| || Sbjct 1128 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1186 >seq46499 Length=6643 Score = 89.7 bits (98), Expect = 2e-12 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| | | ||||| | || ||||| ||||||||| Sbjct 555 AAAGCCAAGCCCCATATTCAAGTTGACGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 614 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAA 451294 ||||||||||| ||||||| || || || ||||| |||||||||||| Sbjct 615 GAAGAAATTTCCGCTATGGTCCTGACAAAGATGAAGGAAACAGCAGAA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974364334603028