Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq12342 105 3e-17
seq46499 89.7 2e-12
>seq12342
Length=2830
Score = 105 bits (116), Expect = 3e-17
Identities = 278/419 (66%), Gaps = 9/419 (2%)
Strand=Plus/Plus
Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252
|| |||||| | | ||||| | || || ||||| | ||||| || || || ||
Sbjct 771 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAAACCTTCTTCCCAGAGGAG 830
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
|| || ||||| ||||| || ||||| || | || || ||| | || | | |
Sbjct 831 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAA 889
Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
| | | || ||| || || ||||| || ||||| |||||||| | || || || || ||
Sbjct 890 GGTGCAGAATGCTGTCATCACTGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCAC 949
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||||||| || || |||| | ||||| | || ||||| || || || |||||
Sbjct 950 CAAAGATGCCGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGC 1009
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486
||||||| |||| ||||| || ||| || ||| | | | | ||| || ||| |
Sbjct 1010 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTG 1067
Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546
| | ||||| || || || || ||| ||| || | ||| | ||||| |||||
Sbjct 1068 CTGATCTTTGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGC 1127
Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
| ||||| || ||| | || |||||| || ||||| || || || || |||| ||
Sbjct 1128 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1186
>seq46499
Length=6643
Score = 89.7 bits (98), Expect = 2e-12
Identities = 85/108 (79%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246
|||| |||||| |||||||||| | | ||||| | || ||||| |||||||||
Sbjct 555 AAAGCCAAGCCCCATATTCAAGTTGACGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 614
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAA 451294
||||||||||| ||||||| || || || ||||| ||||||||||||
Sbjct 615 GAAGAAATTTCCGCTATGGTCCTGACAAAGATGAAGGAAACAGCAGAA 662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974364334603028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |