Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq12342 116 3e-20 >seq12342 Length=2830 Score = 116 bits (128), Expect = 3e-20 Identities = 898/1435 (63%), Gaps = 34/1435 (2%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| || |||||||||||||| | ||||| ||||| || || || ||||| || | Sbjct 1945 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACTCCACGG 1886 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || || ||||| ||| | | ||| | ||||| || || || || || | Sbjct 1885 GGTGCCGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTCGTCATA 1826 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 517442 | ||||||||| | | |||| || | ||| | | || || ||||| ||||| | Sbjct 1825 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGTAAGTGG 1768 Query 517443 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 | || |||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 1767 TGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTAGTGTTACGCTTGATGAGAGCGGTCATC 1709 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | ||||| || || || | || || || ||||| |||||||| | || | | || Sbjct 1708 ACTCCACCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCAGATCC 1649 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 1648 TGCACATTCTCAGACTTATCGCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1589 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 517680 ||||| |||||||| || | | | || || | ||| |||||||| || | || | Sbjct 1588 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGC 1529 Query 517681 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 || || | | ||| || ||||| | || || || || | || || || || | ||| Sbjct 1528 AACTT-TTGGATCTTGGGGATACGGGTGGAGCCACCCACCAGCACGATCTCCTGGATCTG 1470 Query 517741 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAA 517800 | || || || || | ||| | | || || || || || || | | || Sbjct 1469 TCCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTGCCACGGAA 1410 Query 517801 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTGACATTATAATCAAT 517857 | || | | || || ||||| || | ||||| |||| | ||||||| Sbjct 1409 GAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAAGTG---TAGAAATCAAT 1353 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGT 517915 || || || | || |||| ||||| ||| ||| || ||||| || |||| || Sbjct 1352 ACCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--CGC 1295 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAAT 517973 || || | ||||| ||||| | |||| | | || | ||| || | | | Sbjct 1294 TTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACCGC--TCGCTTGTTACCAGCAATGT 1237 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAA 518031 || || | || | |||||| ||||| |||| ||| | || | || || ||||| Sbjct 1236 CTCGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCAAA 1179 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091 || || || |||| | || | || | || | | || | || | ||||| || Sbjct 1178 GTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCCTC 1119 Query 518092 AAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 518151 || | | | | ||||| || || || |||| ||||| || || |||||| | Sbjct 1118 AATGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATCAGCACATTCTT 1059 Query 518152 TTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| | || || || || | ||||| || | |||||| || || || || Sbjct 1058 CTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTC 999 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || ||||| | || |||||||| |||| || | || |||||||| ||||| || | Sbjct 998 GTTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCGGCATCTTTGGTGGCCTGGCG 939 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 || || || || || || ||||| ||||| || || |||| || | || | Sbjct 938 CTGAGAGTCATTGAAGTAAGCAGGCACAGTGATGACAGCATTCTGCACCTTGCGCCCCAG 879 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 ||| || || | | ||||| || | | | ||| || || | ||| |||| Sbjct 878 ATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCT-GGGA 820 Query 518386 ATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | | | || || ||| | || |||| | | || || ||| |||| | Sbjct 819 AGAAGGTTTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCATTCA 760 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 || || ||||||| ||||| || || || || | |||||| | | | | | Sbjct 759 CCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTAGGGTCATCATACTTGCGGC 700 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | || || |||||||| || || ||||| || || ||||| | || | |||| Sbjct 699 CGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATTGCCACCTGGTTCTTGG 640 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | ||||| || || || | ||||| || || || | ||||| || || ||||| | Sbjct 639 CAGCATCACCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGCGTGGTGCGGT 580 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || ||||| || || || || ||||| |||| || | ||||| || || Sbjct 579 TGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778168000380646