Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq22909 201 1e-46 seq46499 89.7 7e-13 >seq22909 Length=29343 Score = 201 bits (222), Expect = 1e-46 Identities = 372/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| || || || | || ||||| ||||| || || || Sbjct 1884 GCACCATAAGCCACAGCCTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1825 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 1824 AAATCTTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 1765 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | |||||| |||| ||| | || || || | ||||| ||||| |||| Sbjct 1764 TCGTGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 1705 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || | |||||||||||| ||| Sbjct 1704 GTGCCACGGAACAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 1645 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||||||||| || | | || | | || || | Sbjct 1644 AAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGACGACAGA 1585 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | || |||| || | | ||| || Sbjct 1584 GTGCGCTTTGCACGCTCGCATGCAGTGCGGAGGCGGCGAACTGCTCTCTTGTTCTCGCTG 1525 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || || ||||| || || | | | | Sbjct 1524 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTT---G 1468 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1467 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1408 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | ||| |||||||| || ||||| || |||||||| || || ||| Sbjct 1407 TCTTCAATAGTCAGAATCGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 1348 Query 7577 TTC 7579 ||| Sbjct 1347 TTC 1345 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||||||||| || || || ||||| | || || | | |||||| ||||| Sbjct 2929 CCCTTATCATTTGTTATTGTGATCTTGTTCTCCTTGCCAGTGCTCTTATCCACAGCAGAC 2870 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 ||||||| || || || ||||||| ||| || |||| | ||| || ||| ||| || Sbjct 2869 ACATTCAGGATGCCGTTGGCATCAATATCAAAGGTTACTTCAATCTGAGGTACACCTCTG 2810 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | |||||||| || | ||||| | || || || |||| ||| | | | | Sbjct 2809 GGAGCAGGGGGAATACCAGTCAGCTCAAACTTGCCCAGCAAGTTGTTGTCCTTAGTCATA 2750 Query 6815 TTACGTTCACCTTCATAGAC 6834 |||||| |||||||| || Sbjct 2749 GCACGTTCTCCTTCATACAC 2730 >seq46499 Length=6643 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || || || |||||||| || ||||| | |||||| || || |||||| Sbjct 225 CCGATGAGCCGTTTGGCATCAAACACAGTGTTCTCGGGGTT---GGACGTGAGCTGGTTC 169 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||||||||| | || || | ||| ||||| ||||| || || || Sbjct 168 TTGGCGGCGTCCCCGATCAAGCGCTCCCCCTCGGGCGTGAACGCCACGTAGGACGGCGTG 109 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 | || ||||| |||||||| || || ||||| |||||| | || | ||||||| ||| Sbjct 108 ATGCGGTTCCCCTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAGACGCCCACG 49 Query 8114 C 8114 | Sbjct 48 C 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634708126392440