Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq16976 127 5e-24 seq22167 84.2 5e-11 >seq16976 Length=50896 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||| || || || || ||||| || | || || | |||||||| Sbjct 49773 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 49832 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || || ||||| ||||||||||| ||||| || Sbjct 49833 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 49892 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 49893 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATTGTC 49949 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 49950 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||| || || || || ||||| || | || || | |||||||| Sbjct 50229 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 50288 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || || ||||| ||||||||||| ||||| || Sbjct 50289 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50348 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 50349 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATTGTC 50405 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 50406 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || ||||| || | || || | |||||||| Sbjct 50001 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 50060 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || || ||||| ||||||||||| ||||| || Sbjct 50061 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50120 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 50121 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 50177 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 50178 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || ||||| || | || || | |||||||| Sbjct 50457 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 50516 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || || ||||| ||||||||||| ||||| || Sbjct 50517 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50576 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 50577 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTTATGGTC 50633 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 50634 TTGCCAGTCATGGTCTTCACAAAGATCTGCAT 50665 >seq22167 Length=6341 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 461 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 402 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || || || |||||||||||| Sbjct 401 TCAGTCGCTGCTGATCAGGAGGAATGCCT 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108721212971597