Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 127 5e-24
seq22167 84.2 5e-11
>seq16976
Length=50896
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || || || || ||||| || | || || | ||||||||
Sbjct 49773 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 49832
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | | || || ||||| ||||||||||| ||||| ||
Sbjct 49833 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 49892
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 49893 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATTGTC 49949
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||||| || || || || | |||||
Sbjct 49950 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || || || || ||||| || | || || | ||||||||
Sbjct 50229 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 50288
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | | || || ||||| ||||||||||| ||||| ||
Sbjct 50289 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50348
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 50349 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATTGTC 50405
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||||| || || || || | |||||
Sbjct 50406 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || || || || || || ||||| || | || || | ||||||||
Sbjct 50001 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 50060
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | | || || ||||| ||||||||||| ||||| ||
Sbjct 50061 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50120
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 50121 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 50177
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 50178 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || || || || || || ||||| || | || || | ||||||||
Sbjct 50457 ACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 50516
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | | || || ||||| ||||||||||| ||||| ||
Sbjct 50517 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 50576
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 50577 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTTATGGTC 50633
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 50634 TTGCCAGTCATGGTCTTCACAAAGATCTGCAT 50665
>seq22167
Length=6341
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||||||||||||||| || | || || | |||||||| ||||||||||| || || |
Sbjct 461 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 402
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||||| || || || ||||||||||||
Sbjct 401 TCAGTCGCTGCTGATCAGGAGGAATGCCT 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108721212971597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |