Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1807 138 1e-27
seq25901 111 2e-19
seq11560 91.5 2e-13
>seq1807
Length=48173
Score = 138 bits (152), Expect = 1e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
||||||||||||| || | |||||||||||| || | |||||||| | ||||||||| |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| |||||||||||||
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| || ||||||
Sbjct 45337 CTACTACTCGTTCTCC 45352
Score = 82.4 bits (90), Expect = 9e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|||||||| || | || || | | |||||||||||||||||| || ||||| || ||
Sbjct 47382 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 47441
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| || || || ||||| | |||||||| || ||||||||
Sbjct 47442 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 47486
>seq25901
Length=46880
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | ||||||||||| ||||| || |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 10905 CAACCACTCTCTCACC 10890
>seq11560
Length=34702
Score = 91.5 bits (100), Expect = 2e-13
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961
|| ||||||||| | | ||||| | | |||||| | ||||||||| | |||||||
Sbjct 9807 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGA 9748
Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021
| || ||||| || || ||||| | ||| || | ||| ||||| ||||| | |
Sbjct 9747 TGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACG 9688
Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054
| || || || ||| ||||||||||||||||||
Sbjct 9687 GCGTGCCGGTCTCTGTCTGAGATTCAATGATAG 9655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561732952977240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |