Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq22909 107 2e-17 seq46499 87.8 1e-11 >seq22909 Length=29343 Score = 107 bits (118), Expect = 2e-17 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||| ||||| || || |||||||| || ||||| || || Sbjct 1063 GTTACTAATGCTGTAGTGACTGTGCCAGCCTACTTCAATGACTCTCAGCGTCAGGCAACA 1122 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| || || || || || || || || ||||||||||| || || ||| Sbjct 1123 AAAGATGCTGGAACCATCGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCGACAGCT 1182 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1183 GCTGCCATAGCCTATGGCCTGGACAAA 1209 >seq46499 Length=6643 Score = 87.8 bits (96), Expect = 1e-11 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAAT-GTTAAGT 552173 |||| ||||| ||||||||||| ||||| | || || ||||| | || | |||||| Sbjct 1917 ATGAGATTGTTCTTGTTGGTGGCTCTACTCGCATCCCCAAAATACAGCAACTAGTTAAGG 1976 Query 552174 TCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTAT 552233 || ||||||||| ||| || | | ||||||||||||||||||| |||||| Sbjct 1977 AGTT-TTTCAATGGGAAAGAACCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCCTAT 2035 Query 552234 GGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 ||||| || |||| || | | |||| ||||| Sbjct 2036 GGTGCGGCTGTTCAGGCTGGTGTTCTCTCTGG 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026467154675590