Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq16976 114 1e-20 >seq16976 Length=50896 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| ||||| | || | |||||||||||||| || || || ||||| || | Sbjct 49983 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50042 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || || || ||||| | ||| ||||| || ||| Sbjct 50043 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50102 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || ||| | || | |||||| | || || Sbjct 50103 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50162 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 50163 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 50210 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| ||||| | || | |||||||||||||| || || || ||||| || | Sbjct 50439 CCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 50498 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || || || ||||| | ||| ||||| || ||| Sbjct 50499 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50558 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || ||| | || | |||||| | || || Sbjct 50559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50618 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || || || | || ||||| || | || || ||||| ||||||||| ||| Sbjct 50619 TCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATGTTTA 50670 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| ||||| | || | ||||||||| ||||| || || || ||||| || | Sbjct 50211 CCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 50270 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||| | ||| ||||| || ||| Sbjct 50271 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50330 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || ||| | || | |||||| | || || Sbjct 50331 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50390 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 50391 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50438 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || || ||||| || | | || | | |||| || | || Sbjct 49778 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTG 49837 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| | ||| ||||| || ||||||||||| || || || ||||| Sbjct 49838 CTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 49897 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| | || || || || |||| || ||||| || Sbjct 49898 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTGT 49957 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 49958 CAGGGTCTTCACAAAGATCTGCATG 49982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396020057566287