Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq25356 255 7e-63 seq9186 131 2e-25 >seq25356 Length=16095 Score = 255 bits (282), Expect = 7e-63 Identities = 654/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || |||||| | Sbjct 9395 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCGAACT 9336 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 9335 TATTAGCAAAAAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCCACCCCAAAAA 9279 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || ||||| || || |||| || ||||| | || ||||| | ||| | Sbjct 9278 CACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 9219 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||||||||||| ||||| ||||| | || | |||||| || |||| Sbjct 9218 CACCCTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAAACATCGT 9159 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 9158 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 9100 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 || | ||| || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 9099 AGATATTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 9040 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || || | |||| | || ||||| || || || || || || Sbjct 9039 CTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 8980 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 8979 ATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTACGCCCGTGTTCTTTATTTTACCATCA 8920 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 8919 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 8860 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || ||| |||| ||||| | Sbjct 8859 AAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCTTGGTTGGTCTTTATA 8800 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | ||||| | |||||| | ||| ||||| || | || || ||| Sbjct 8799 GGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTACAGA 8740 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| ||||| || ||||| Sbjct 8739 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTCT 8680 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 8679 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 8621 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | ||| ||| || || | ||| || | |||||||| || || || Sbjct 8620 AAAAGATTCTGGAGACTTCTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAAAT 8561 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | ||||||||| || |||| | ||| || ||||| || || Sbjct 8560 TGATCTTAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCACTATTGAGTAAGCAAT 8501 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 |||||| || | || || || || | | | | ||| |||| |||||| | || Sbjct 8500 CGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTTCTAGTCTTGGTGAA 8441 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 8440 GGAGGCACAGTCTGCTGTCATGTTAATATA 8411 >seq9186 Length=1033 Score = 131 bits (144), Expect = 2e-25 Identities = 205/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || || ||||| | ||| || |||||| ||||||| || Sbjct 1026 GTCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 970 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | |||||||| || |||| |||| |||| || ||||| | || || || Sbjct 969 CCCGTAGATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGTGGGTAGGGCGCGCCCTT 910 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||| || || ||||||||||||||| | | || | || | |||||| || Sbjct 909 GCTGGTGTCGCCCTCCAGGTACTGCCACTTCACCAGGCGGGGCAAGGCGTTCATGTCCGA 850 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | | | |||| || | || | ||| || || ||||||||||| || | ||||| Sbjct 849 GAGCTGGAACTTGTCGTTCTGCGGCATGGCGCCTGGCACGCCGGGCATGCGGTTGAGGGT 790 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 |||||| | ||| ||||| |||||||| |||||||| | ||| || | ||||| Sbjct 789 GGCCCAGACGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576833249597160