Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq25356 255 7e-63
seq9186 131 2e-25
>seq25356
Length=16095
Score = 255 bits (282), Expect = 7e-63
Identities = 654/990 (66%), Gaps = 7/990 (1%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || || |||| ||||| || || || |||||| || |||||| |
Sbjct 9395 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCGAACT 9336
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| |||| ||||||| || |||||| ||| || |
Sbjct 9335 TATTAGCAAAAAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCCACCCCAAAAA 9279
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || ||||| || || |||| || ||||| | || ||||| | ||| |
Sbjct 9278 CACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 9219
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||| || ||||||||||||| ||||| ||||| | || | |||||| || ||||
Sbjct 9218 CACCCTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAAACATCGT 9159
Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| |||| || || | ||| ||||| || || | || || | ||| | || ||||||
Sbjct 9158 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 9100
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
|| | ||| || |||||||| ||||| || | ||| || ||||||| ||| |||
Sbjct 9099 AGATATTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 9040
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | || || | |||| | || ||||| || || || || || ||
Sbjct 9039 CTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 8980
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
|| || | | ||| || | |||||| || ||||| | || |
Sbjct 8979 ATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTACGCCCGTGTTCTTTATTTTACCATCA 8920
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
| | | | || | || |||||||| || || | ||||| ||| || ||
Sbjct 8919 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 8860
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
| ||||| |||| | || | ||| | | || || || ||| |||| ||||| |
Sbjct 8859 AAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCTTGGTTGGTCTTTATA 8800
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
|||||||| | ||||| | |||||| | ||| ||||| || | || || |||
Sbjct 8799 GGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTACAGA 8740
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
|| ||||||| ||||| ||||||||||| | |||||| ||||| ||||| || |||||
Sbjct 8739 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTCT 8680
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823
| | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| ||
Sbjct 8679 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 8621
Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
|| | || | | ||| ||| || || | ||| || | |||||||| || || ||
Sbjct 8620 AAAAGATTCTGGAGACTTCTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAAAT 8561
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | ||||||||| || |||| | ||| || ||||| || ||
Sbjct 8560 TGATCTTAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCACTATTGAGTAAGCAAT 8501
Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002
|||||| || | || || || || | | | | ||| |||| |||||| | ||
Sbjct 8500 CGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTTCTAGTCTTGGTGAA 8441
Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032
| |||| || |||||||| |||||
Sbjct 8440 GGAGGCACAGTCTGCTGTCATGTTAATATA 8411
>seq9186
Length=1033
Score = 131 bits (144), Expect = 2e-25
Identities = 205/293 (70%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
|||||| || || || || || ||||| | ||| || |||||| ||||||| ||
Sbjct 1026 GTCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 970
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
|||| | | |||||||| || |||| |||| |||| || ||||| | || || ||
Sbjct 969 CCCGTAGATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGTGGGTAGGGCGCGCCCTT 910
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
||| || || ||||||||||||||| | | || | || | |||||| ||
Sbjct 909 GCTGGTGTCGCCCTCCAGGTACTGCCACTTCACCAGGCGGGGCAAGGCGTTCATGTCCGA 850
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| | | | |||| || | || | ||| || || ||||||||||| || | |||||
Sbjct 849 GAGCTGGAACTTGTCGTTCTGCGGCATGGCGCCTGGCACGCCGGGCATGCGGTTGAGGGT 790
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
|||||| | ||| ||||| |||||||| |||||||| | ||| || | |||||
Sbjct 789 GGCCCAGACGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576833249597160
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