Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq12342 116 3e-20 >seq12342 Length=2830 Score = 116 bits (128), Expect = 3e-20 Identities = 900/1436 (63%), Gaps = 36/1436 (3%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || |||||||||||||| | ||||| ||||| || || || ||||| || | Sbjct 1945 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACTCCACGG 1886 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || ||||| ||| | | ||| | ||||| || || || || || | Sbjct 1885 GGTGCCGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTCGTCATA 1826 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||||||| | | |||| || | ||| | | || || ||||| ||||| | Sbjct 1825 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGTAAGTGG 1768 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || |||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 1767 TGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTAGTGTTACGCTTGATGAGAGCGGTCATC 1709 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | |||||||| || || | || || || ||||| |||||||| | || | | || Sbjct 1708 ACTCCACCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCAGATCC 1649 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 1648 TGCACATTCTCAGACTTATCGCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1589 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 281847 ||||| |||||||| || | | | || || | ||| |||||||| || | || | Sbjct 1588 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGC 1529 Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 || || | | ||| || ||||| | || || || || | || || || || | ||| Sbjct 1528 AACTT-TTGGATCTTGGGGATACGGGTGGAGCCACCCACCAGCACGATCTCCTGGATCTG 1470 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 | || || || || | ||| | | || || || || || || | | || Sbjct 1469 TCCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTGCCACGGAA 1410 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTGACATTATAATCAAT 282024 | || | | || || ||||| || | ||||| |||| | ||||||| Sbjct 1409 GAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAAGTG---TAGAAATCAAT 1353 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGT 282082 || || || | || |||| ||||| ||| ||| || ||||| || |||| || Sbjct 1352 ACCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--CGC 1295 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAAT 282140 || || | ||||| ||||| | |||| | | || | ||| || | | | Sbjct 1294 TTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACCGC--TCGCTTGTTACCAGCAATGT 1237 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAA 282198 || || | || | |||||| ||||| |||| ||| | || | || || ||||| Sbjct 1236 CTCGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCAAA 1179 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || |||| | || | || | || | | || | || | ||||| || Sbjct 1178 GTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCCTC 1119 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 || | | | | ||||| || || || |||| ||||| || || |||||| | Sbjct 1118 AATGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATCAGCACATTCTT 1059 Query 282319 TTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 ||| | || || || || | ||||| || | |||||| || || || || Sbjct 1058 CTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTC 999 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || ||||| | || |||||||| |||| || | || |||||||| ||||| || | Sbjct 998 GTTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCGGCATCTTTGGTGGCCTGGCG 939 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAA 282491 || || || || || || ||||| ||||| || || ||| |||| || | || | Sbjct 938 CTGAGAGTCATTGAAGTAAGCAGGCACAGTGATGACAGCATTCTG-CACCTTGCGCCCCA 880 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||| || || | | ||||| || | | | ||| || || | ||||| | Sbjct 879 GATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTGG-G 821 Query 282552 AATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 || | | || || ||| | || |||| | | || || ||| |||| Sbjct 820 AAGAAGGTTTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCATTC 761 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 | || || ||||| | ||||| || || || || | |||||| | | | | Sbjct 760 ACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTAGGGTCATCATACTTGCGG 701 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || || | || || |||||||| || || ||||| || || | ||| | || | ||| Sbjct 700 CCGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATTGCCACCTGGTTCTTG 641 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| || || || | ||||| || || || | ||||| || || ||||| Sbjct 640 GCAGCATCACCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGCGTGGTGCGG 581 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || || ||||| || || || || ||||| |||| || | ||||| || || Sbjct 580 TTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738004217952966