Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 116 4e-21
seq11560 91.5 1e-13
>seq16976
Length=50896
Score = 116 bits (128), Expect = 4e-21
Identities = 151/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | |||||| || ||||| || ||||| || || ||| | | | || || ||||
Sbjct 49778 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAGCT 49836
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | || |||||| || || || |||||||||||||| ||| |
Sbjct 49837 GCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTT 49896
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | ||||| ||||| ||||||| || |||| ||||| || ||||| |
Sbjct 49897 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTG 49956
Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661
|||| || || || || |||||||||
Sbjct 49957 TCAGGGTCTTCACAAAGATCTGCATG 49982
Score = 116 bits (128), Expect = 4e-21
Identities = 151/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | |||||| || ||||| || ||||| || || ||| | | | || || ||||
Sbjct 50234 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAGCT 50292
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | || |||||| || || || |||||||||||||| ||| |
Sbjct 50293 GCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTT 50352
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | ||||| ||||| ||||||| || |||| ||||| || ||||| |
Sbjct 50353 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTG 50412
Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661
|||| || || || || |||||||||
Sbjct 50413 TCAGGGTCTTCACAAAGATCTGCATG 50438
Score = 114 bits (126), Expect = 1e-20
Identities = 147/200 (74%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || ||||| || ||||| || || ||| | | | || || ||||||||||
Sbjct 50012 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 50070
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | || |||||| || || || |||||||||||||| ||| || ||
Sbjct 50071 CAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCT 50130
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| |
Sbjct 50131 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 50190
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || || || |||||||||
Sbjct 50191 TCTTCACAAAGATCTGCATG 50210
Score = 105 bits (116), Expect = 6e-18
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || ||||| || ||||| || || ||| | | | || || ||||||||||
Sbjct 50468 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 50526
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | || |||||| || || || |||||||||||||| ||| || ||
Sbjct 50527 CAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCT 50586
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| ||||| ||||||| || |||| ||| | ||| ||||| |||| |
Sbjct 50587 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTCTTGCCAGTCATGG 50646
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || || || |||||||||
Sbjct 50647 TCTTCACAAAGATCTGCATG 50666
>seq11560
Length=34702
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
||||| || || || | || ||||||||||||||||| |||| ||||| ||||||
Sbjct 9784 TACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 9725
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||| | |||||| | ||| |||||||||||||||||
Sbjct 9724 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGG 9687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483097566724840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |