Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq16976 116 4e-21 seq11560 91.5 1e-13 >seq16976 Length=50896 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 49778 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAGCT 49836 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | || |||||| || || || |||||||||||||| ||| | Sbjct 49837 GCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTT 49896 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || |||| ||||| || ||||| | Sbjct 49897 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTG 49956 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 49957 TCAGGGTCTTCACAAAGATCTGCATG 49982 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 50234 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAGCT 50292 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | || |||||| || || || |||||||||||||| ||| | Sbjct 50293 GCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTT 50352 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || |||| ||||| || ||||| | Sbjct 50353 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTCTTGCCTG 50412 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 50413 TCAGGGTCTTCACAAAGATCTGCATG 50438 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 50012 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 50070 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||| || || || |||||||||||||| ||| || || Sbjct 50071 CAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCT 50130 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 50131 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 50190 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 50191 TCTTCACAAAGATCTGCATG 50210 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 50468 GGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 50526 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||| || || || |||||||||||||| ||| || || Sbjct 50527 CAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCT 50586 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || |||| ||| | ||| ||||| |||| | Sbjct 50587 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTCTTGCCAGTCATGG 50646 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 50647 TCTTCACAAAGATCTGCATG 50666 >seq11560 Length=34702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | || ||||||||||||||||| |||| ||||| |||||| Sbjct 9784 TACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 9725 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | |||||| | ||| ||||||||||||||||| Sbjct 9724 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGG 9687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483097566724840