Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq25356 176 5e-39 >seq25356 Length=16095 Score = 176 bits (194), Expect = 5e-39 Identities = 576/885 (65%), Gaps = 25/885 (3%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 |||||||| || || || | ||| || ||| | | ||||| || || || ||| Sbjct 9342 TCGAACTTATTAGCAAAAAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCTCCCACC 9286 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || | ||| || || ||||| || || || | || || | | Sbjct 9285 CCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTG 9226 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| ||||| |||| |||||||| || || || | | || | |||||| || Sbjct 9225 GACACATCACCCTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAA 9166 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || || | || | |||||| | || Sbjct 9165 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGT 9107 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||| | ||| ||||| || || || || || | |||||| ||||||| | | Sbjct 9106 TGCCCACAGATATTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 9050 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || ||||| || | ||| | || | ||| || || || Sbjct 9049 TATTTTGCTGCTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 8990 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || ||| ||||||| |||||||| || Sbjct 8989 ACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTACGCCCGTGTTCTTTAT 8930 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | | | | || || ||||||| | ||| || || || Sbjct 8929 TTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 8874 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | || || | | || || ||| Sbjct 8873 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCTT 8814 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| |||||||||| || || | |||||||| || | Sbjct 8813 GGTTGGTCTTTATAGGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAAC 8754 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || ||||||||| | | ||||| | || ||||| || | ||||| || || | Sbjct 8753 TTCTTCTGTACAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 8694 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 |||| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 8693 ACACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 8634 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || || | || | || || | ||| | || || || | |||||| | || Sbjct 8633 TCACAGC-AGCAAAAAAAGATTCTGGA--GACTTCTTGTCAACATGAATGCAGTAAAAAT 8577 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||| || || | || || | ||| || | ||||||||| || || | |||| Sbjct 8576 TCTGAGGGGCATAAATTGATCTTAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCA 8517 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || || || || || ||||||| Sbjct 8516 CTATTGAGTAAGCAATCGGAAATTCTGCTTCTTCATTGCTGAGAG 8472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578045238673600