Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq25901 138 2e-27
seq1807 129 8e-25
seq11560 109 8e-19
>seq25901
Length=46880
Score = 138 bits (152), Expect = 2e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 10905 CAACCACTCTCTCACC 10890
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 8483 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 8424
Query 39854 AA 39855
||
Sbjct 8423 AA 8422
>seq1807
Length=48173
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| |||||||| || | ||| |||||||| |||||||||||||||| || | || |
Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || |||||
Sbjct 45337 CTACTACTCGTTCTCC 45352
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||||
Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
|||| || || ||||||||||| ||||| |||||
Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || || || || | ||||| |||||||||||||| |||||||| || ||
Sbjct 47382 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 47441
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | ||||| || |||||||| |||
Sbjct 47442 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 47487
>seq11560
Length=34702
Score = 109 bits (120), Expect = 8e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| |||| ||| || ||||| ||||| ||||| || | || || || ||||| || |
Sbjct 2388 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 2329
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||||||||| |||| || || || || ||| |||| ||||| | |||||| |
Sbjct 2328 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGCGTATCCA 2269
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || ||||| ||||| ||||||||||
Sbjct 2268 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 2221
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383
||| |||||||||||||| || |||||||| ||||||| || |||||||| |||||
Sbjct 9776 TATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCG 9717
Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443
||| || | ||| ||||| || || |||| || || || || |||||||||| || ||
Sbjct 9716 GTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTGAGATTCAATGAT 9657
Query 69444 AG 69445
||
Sbjct 9656 AG 9655
Score = 93.3 bits (102), Expect = 6e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| ||||||| || | || |||||||| || || || ||
Sbjct 12183 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 12124
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
|||||||||||||| || || ||||||| || || | || || || |||| ||
Sbjct 12123 GCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 12064
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| || || | | || || |||||||||| ||||| || ||||| || || ||
Sbjct 12063 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGA 12004
Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152
| ||| | | || || | ||||||
Sbjct 12003 CGATGGCGTCTGTTGGAGCGTTCAGC 11978
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| || | || || || || || || |
Sbjct 16028 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 15969
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || || ||||| |||||||||||||| ||||| ||||| || | || | |
Sbjct 15968 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 15909
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | |||||||| | |||||| | | ||| || | ||||| ||||
Sbjct 15908 TCTGGGAGATTTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 15858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686449507017240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |