Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25901 138 2e-27 seq1807 129 8e-25 seq11560 109 8e-19 >seq25901 Length=46880 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 11025 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 10966 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 10965 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10906 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 10905 CAACCACTCTCTCACC 10890 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 8483 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 8424 Query 39854 AA 39855 || Sbjct 8423 AA 8422 >seq1807 Length=48173 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 45217 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 45276 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 45277 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 45336 Query 39759 CAACAAGTCTCTCTCC 39774 | || | || ||||| Sbjct 45337 CTACTACTCGTTCTCC 45352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || || ||||||||||| ||||| ||||| Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | ||||| |||||||||||||| |||||||| || || Sbjct 47382 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 47441 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 47442 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 47487 >seq11560 Length=34702 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| ||||| ||||| || | || || || ||||| || | Sbjct 2388 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGGA 2329 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| |||| || || || || ||| |||| ||||| | |||||| | Sbjct 2328 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGCGTATCCA 2269 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || ||||| ||||| |||||||||| Sbjct 2268 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 2221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||| |||||||||||||| || |||||||| ||||||| || |||||||| ||||| Sbjct 9776 TATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCG 9717 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| || | ||| ||||| || || |||| || || || || |||||||||| || || Sbjct 9716 GTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTGAGATTCAATGAT 9657 Query 69444 AG 69445 || Sbjct 9656 AG 9655 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| ||||||| || | || |||||||| || || || || Sbjct 12183 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 12124 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 |||||||||||||| || || ||||||| || || | || || || |||| || Sbjct 12123 GCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 12064 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | | || || |||||||||| ||||| || ||||| || || || Sbjct 12063 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGA 12004 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 | ||| | | || || | |||||| Sbjct 12003 CGATGGCGTCTGTTGGAGCGTTCAGC 11978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || |||||| || | || || || || || || | Sbjct 16028 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 15969 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | || | | Sbjct 15968 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 15909 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | |||||| | | ||| || | ||||| |||| Sbjct 15908 TCTGGGAGATTTCCCACACTGTCTTATAGAGCTGCTTCAAGTCATCAGGAA 15858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686449507017240