Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11560 96.9 4e-15 >seq11560 Length=34702 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | ||||| | | ||||| || ||||| || || || |||||||| ||||||||| Sbjct 9648 TGGTATGCTATCATTGAATCTCAGACAGAGACCGGCACGCCGTACATGCTGTACAAAGAC 9707 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 | || |||| ||||| ||||| |||| ||||| ||||| | |||||| ||| Sbjct 9708 TCTTGCAACCGGAAGAGCAATCAGCAGAACTTGGGGACCATCAAATGCAGCAATCTATGT 9767 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| |||| | ||| |||||||||| Sbjct 9768 ACAGAAATAGTGGAGTATACCAGCAAAGATGAG 9800 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 ||||| || ||| | |||| |||||||| || || || || || |||||||| ||||| Sbjct 13527 AACAGCCTTCTCCTTTCTCCCATGCCAACTGCTTCTACTGCTCAGATCTTGGGCAATAAC 13586 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 |||| | | || |||||||| | |||||||| | ||| |||| ||||||||||| Sbjct 13587 GAATCCATCGAGCCCTACACCAGTAACATCTACACACGCAGAGTCCTCTCGGGAGAGTTT 13646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582870809956840