Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25901 89.7 6e-13 seq43177 86.0 7e-12 seq37196 82.4 8e-11 >seq25901 Length=46880 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 11023 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 10964 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 10963 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10904 Query 74892 AC 74893 || Sbjct 10903 AC 10902 >seq43177 Length=44893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 30783 GTGAAAATATAGCGAGGGCTCGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTGA 30842 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| || |||||||| ||||||||||||||| Sbjct 30843 CCAATAGGTTGTAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 30902 Query 117425 ATCGT 117429 || || Sbjct 30903 ATAGT 30907 >seq37196 Length=22031 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 12806 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 12865 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | |||||||||||| |||||| || |||||||| || || | | Sbjct 12866 CCAATAGGCTGTAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 12925 Query 152149 ATCGT 152153 || || Sbjct 12926 ATAGT 12930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546850110861800