Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16976 179 4e-40 >seq16976 Length=50896 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 49981 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 49922 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 49921 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 49862 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 49861 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 49802 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| |||||||| || |||| || | ||||| Sbjct 49801 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGCCTGAGGGGTGG 49755 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 50437 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTGAGCCCAGT 50378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 50377 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 50317 CAGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 50258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| |||||||| || ||||| | | ||||| Sbjct 50257 ATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGTTTGAGAGGTGG 50211 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 50209 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 50150 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 50149 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50090 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 50089 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 50030 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || ||||| || || ||||| | | ||||| Sbjct 50029 ATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGG 49983 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || || ||||||||| | || Sbjct 50665 ATGCAGATCTTTGTGAAGACCATGACTGGCAAGACCATAACCCTCGAGGTTGAGCCCAGT 50606 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 50605 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 50546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 50545 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 50486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || ||||| || || ||||| | | ||||| Sbjct 50485 ATCCAGAAGGAATCTACCCTTCACCTTGTGCTGCGTTTGAGAGGTGG 50439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569929069079920