Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq9186 163 4e-35 >seq9186 Length=1033 Score = 163 bits (180), Expect = 4e-35 Identities = 581/899 (65%), Gaps = 38/899 (4%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||||| || ||||||||||| || || |||||| |||| Sbjct 143 CCGCTGAGCCAGGAGGAGGCAGAGTTCCCTATCGCCTACTCCATGGTCATCCACAACAAA 202 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| |||||| || || | |||||||| |||| ||||||||| | Sbjct 203 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTGTACGCCCCTACGAACGTCTACTGCGGC 262 Query 13791 -----------CACG---TGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGG 13836 |||| | ||| ||||||| | || ||| || ||| || Sbjct 263 CCCATTGACAGCACGTCATTGACAGCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGG 322 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 |||| | |||||||| || || |||| ||| ||| | | ||||| || | Sbjct 323 CCATTGTAGCTTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATG 382 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 ||||||| || ||||||||||||||| ||||||| ||||||| ||| | Sbjct 383 CCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTG 442 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 | ||| | ||| | |||||| ||||| | || ||||| |||| |||||| | Sbjct 443 TGCCATGGCGCTACGTCCTCAACACCTGCGGCACCGATTTCCCCATCAAAACCAACGCCG 502 Query 14017 AGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT 14074 ||||||| || | ||||||| ||| || |||| | ||||| || || | | | Sbjct 503 AGATCGTCCGTGTCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCT 562 Query 14075 GCCCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGT 14134 | | ||||| | | || | || || ||| || || || || Sbjct 563 --CGGCCTTCAAGCGGGAGCG---CTGGCAGTACCAC----CATAAAGTGGGGGAGT--- 610 Query 14135 GGTCAAC-ACCGG-CAGGAACA-AGGCCCCGCCGCCGCTCAGGATC---CCCATCTTTGC 14188 ||| | |||| ||| ||| || | ||| || | | | | ||||| || | Sbjct 611 --TCATCTTCCGGACAGCCACAGAGAAACTGCCACCACCCCACAACTCTCCCATGTTCAC 668 Query 14189 GGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCC 14248 || ||||| ||| | |||||| |||| |||||| | | || | || || | Sbjct 669 AGGCAACGCGTACATCCTGGTCACGCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCAC 728 Query 14249 GGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGC 14308 || | | | || | | ||| | ||||||| |||||||| ||||||||| | ||||| Sbjct 729 GGCGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGC 788 Query 14309 CACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACAC 14368 |||| | | | ||| ||| ||| || | || || ||| ||||| | | Sbjct 789 CACCCTCAACCGCATGCCCGGCGTGCCAGGCGCCATGCCGCAGAACGACAAGTTCCAGCT 848 Query 14369 CTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAA 14428 |||||||||| ||| | | | | || |||||||| ||| ||||| || | || Sbjct 849 CTCGGACATGAACGCCTTGCCCCGCCTGGTGAAGTGGCAGTACCTGGAGGGCGACACCAG 908 Query 14429 GAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGG 14488 || || || | ||||| || ||| |||| ||| | |||| ||||||||| ||| Sbjct 909 CAAGGGCGCGCCCTACCCACCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGG 968 Query 14489 GTCCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | ||||||||| ||| || | ||| | | ||||| || ||||||||||||||| Sbjct 969 GGTGGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGAC 1026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658298742268160