Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq32325 116 3e-21
seq28409 96.9 3e-15
>seq32325
Length=38855
Score = 116 bits (128), Expect = 3e-21
Identities = 143/189 (76%), Gaps = 5/189 (3%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| |||||||| || |||||||||||||| || || || ||||||| ||
Sbjct 36769 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 36828
Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
||||| || || || || ||| ||| ||| |||| || || | || || || || |
Sbjct 36829 CCCCTCCTCTCTGGTACT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 36887
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401
|||| |||||||| ||||| ||||||||||||| | ||||| || || || || || |
Sbjct 36888 CCCAAATCTTTACACCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACAAAAC 36945
Query 30402 ACAG-CAGC 30409
|||| ||||
Sbjct 36946 ACAGACAGC 36954
Score = 104 bits (114), Expect = 2e-17
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000
|||||| ||||| || || |||||||| ||||| || || |||||||| || || || ||
Sbjct 33421 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 33480
Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060
|| || || ||||| || || |||||||| ||||| || || || | || || |
Sbjct 33481 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 33540
Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | || ||||||||||| | |||||| ||
Sbjct 33541 AACATAGAACTGGCAAAGCGCATGGCACGGAGGCAAAGCCATCAG 33585
>seq28409
Length=25514
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || ||||||||||| |||| || || |||||| | | ||| | |||||| || ||
Sbjct 2090 TTGAGGTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 2031
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||||||||||||||||| | ||||| || |||
Sbjct 2030 ATGGAGAACCAGGTCTTTCTACCCATTATCAGTGCATTCTGTTTACCT 1983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406045517489172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |