Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq32325 87.8 2e-12 >seq32325 Length=38855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 36779 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 36838 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| ||||| Sbjct 36839 CTGGTACTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTT 36898 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || ||| | |||||||| || Sbjct 36899 ACACCCTTTGCAGAGAGCTCTTT 36921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || |||||||| | ||| || ||||| ||||| ||| | || || || || || ||| Sbjct 36921 AAAGAGCTCTCTGCAAAGGGTGTAAAGATTTGGGATGCTAATGGATCACGTGAGTTCCTG 36862 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 || |||| ||| ||| | | |||||||| || ||||| || || || || |||||| Sbjct 36861 GATAAGCAGGGTTTCAGTACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCCAG 36802 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || || || Sbjct 36801 TGGAGGCACTTTGGAGCAGAATA 36779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447962674949520