Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq17761 109 5e-19 seq32325 87.8 1e-12 >seq17761 Length=8667 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||||||||| |||||||| | || || || ||||| ||| Sbjct 1642 GTGGTGGAGGAGCTGTTCCGAGATGGGGTTAACTGGGGCAGGATCGTGGCCTTCTTCGAG 1701 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || ||||| ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 1702 TTCGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 1761 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| | |||||||| || Sbjct 1762 ATCGCCACCTGGATGACCGA 1781 >seq32325 Length=38855 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||| ||||| Sbjct 33422 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 33481 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| || | ||||||||| | || || ||| | Sbjct 33482 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 33541 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 33542 ACATAGAACTG 33552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414206593636924