Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16976 167 5e-36 >seq16976 Length=50896 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || || |||||||| || || | ||||| | |||||| Sbjct 49998 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50057 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || || || || |||| |||||||||||| Sbjct 50058 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50117 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 50118 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 50177 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 50178 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| || || |||||||| || || | ||||| | |||||| Sbjct 49770 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49829 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | | || || || || |||| |||||||||||| Sbjct 49830 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 49889 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 49890 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTC 49949 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 49950 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| || || |||||||| || || | ||||| | |||||| Sbjct 50226 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50285 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | | || || || || |||| |||||||||||| Sbjct 50286 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 50346 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATTGTC 50405 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 50406 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || || |||||||| || || | ||||| | |||||| Sbjct 50454 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || || || || |||| |||||||||||| Sbjct 50514 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50573 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || ||||||||| | ||||||||||| || || ||| Sbjct 50574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTC 50633 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | |||||| || Sbjct 50634 TTGCCAGTCATGGTCTTCACAAAGATCTGCATGTT 50668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158357571192215