Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1807 120 3e-22 seq25901 113 4e-20 >seq1807 Length=48173 Score = 120 bits (132), Expect = 3e-22 Identities = 110/138 (80%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| ||||||| || || ||||| |||||||| || | ||| |||||||| || Sbjct 45210 ATTCATACCT-CGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCC 45268 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 45269 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 45328 Query 4682 GGCAAACGCTACTAATCG 4699 ||||| ||||||| ||| Sbjct 45329 TGCAAAAGCTACTACTCG 45346 >seq25901 Length=46880 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | |||||||| || Sbjct 11023 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 10964 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 10963 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10904 Query 4692 AC 4693 || Sbjct 10903 AC 10902 Score = 100 bits (110), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || |||||||| ||||| || || || |||||||||||||| |||| || Sbjct 6244 AAAGCTTTCTCACCAAGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGAA 6185 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||||| |||||||| | ||| || | || || || ||||| || || | || || | Sbjct 6184 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAATGAGGAAGGTCCTTTG 6125 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 6124 ACAAATCAAC 6115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426771197157503