Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1807 107 3e-18
seq11560 102 1e-16
seq25901 89.7 7e-13
>seq1807
Length=48173
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| |||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| ||
Sbjct 45219 TCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 45278
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 45279 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 45337
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| || || ||||| || ||||| || ||||||
Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| || || |||||||| || ||||| |||||
Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012
Score = 86.0 bits (94), Expect = 9e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||||| ||| || || || | |||||| |||||||| || || || ||||| || ||
Sbjct 47382 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 47441
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || || || ||||| | ||||||||||| ||||| ||
Sbjct 47442 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 47486
>seq11560
Length=34702
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061
|||||| ||||| ||||||||||| ||||| || |||| || || |||| || || ||
Sbjct 8441 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 8382
Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
|| || || || || ||||| |||||| || |||||||| | || || |||||||||
Sbjct 8381 CTCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 8323
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150
| || || || || || | | |||||||||
Sbjct 8322 GCTCCAGGTAGATGGCAAAAGCTCCAGGTC 8293
Score = 96.9 bits (106), Expect = 5e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||| ||||| || | ||||| || ||||| || |||||||| || || || | |||
Sbjct 13648 TGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 13589
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
|| || || ||||| || ||||||||||||||||||||||| || | | | | ||
Sbjct 13588 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGGCTG 13529
Query 77247 TTTCTGAGACCAT 77259
||||||| |||||
Sbjct 13528 TTTCTGACACCAT 13516
Score = 93.3 bits (102), Expect = 6e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763
||||||||| | ||| ||| | | ||| || ||||||||||| || |||||||| |
Sbjct 9804 CTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGG 9745
Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823
| |||| || || || |||||||| ||||| ||||| || || || || |||| |
Sbjct 9744 TCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCG 9685
Query 77824 TCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862
| ||||| || |||| ||||| || |||| | |||||
Sbjct 9684 TGCCGGTCTCTGTCTGAGATTCAATGATAGCATACCAGA 9646
Score = 89.7 bits (98), Expect = 7e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | |||||||||||| ||||||| || || || |||||||| || ||||||||
Sbjct 12183 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTG-GCAAGTTCACAGCTGGCTTCCAA 12125
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
|| ||||||||||| || || ||||||| || || | || || || ||| ||
Sbjct 12124 AGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTC 12065
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | | || || |||||||| | ||||| || ||||| ||||| ||
Sbjct 12064 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGG 12005
Query 77534 TCTATG 77539
| |||
Sbjct 12004 ACGATG 11999
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| || |||||| || | || || || || || || |
Sbjct 16028 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 15969
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || ||||| |||||||||||||| || || ||||| || | ||||| |
Sbjct 15968 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 15909
Query 76969 TTTGAGGAATTTCCCA 76984
| || | ||||||||
Sbjct 15908 TCTGGGAGATTTCCCA 15893
>seq25901
Length=46880
Score = 89.7 bits (98), Expect = 7e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || || || || || || ||||| || || | || ||
Sbjct 11023 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 10964
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||||||||| || || || || || |||||||| |||||||| || || ||||| ||
Sbjct 10963 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 10905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694204318390240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |