Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1807 107 3e-18 seq11560 102 1e-16 seq25901 89.7 7e-13 >seq1807 Length=48173 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || |||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 45219 TCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 45278 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 45279 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 45337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 43918 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 43977 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || |||||||| || ||||| ||||| Sbjct 43978 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 44012 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| || || || ||||| || || Sbjct 47382 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 47441 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 47442 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 47486 >seq11560 Length=34702 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 8441 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 8382 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 || || || || || ||||| |||||| || |||||||| | || || ||||||||| Sbjct 8381 CTCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 8323 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | ||||||||| Sbjct 8322 GCTCCAGGTAGATGGCAAAAGCTCCAGGTC 8293 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 13648 TGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 13589 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || ||||| || ||||||||||||||||||||||| || | | | | || Sbjct 13588 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGGCTG 13529 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 13528 TTTCTGACACCAT 13516 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||| | | ||| || ||||||||||| || |||||||| | Sbjct 9804 CTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGG 9745 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | |||| || || || |||||||| ||||| ||||| || || || || |||| | Sbjct 9744 TCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCG 9685 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 | ||||| || |||| ||||| || |||| | ||||| Sbjct 9684 TGCCGGTCTCTGTCTGAGATTCAATGATAGCATACCAGA 9646 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | |||||||||||| ||||||| || || || |||||||| || |||||||| Sbjct 12183 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTG-GCAAGTTCACAGCTGGCTTCCAA 12125 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || ||||||||||| || || ||||||| || || | || || || ||| || Sbjct 12124 AGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTC 12065 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | | || || |||||||| | ||||| || ||||| ||||| || Sbjct 12064 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGG 12005 Query 77534 TCTATG 77539 | ||| Sbjct 12004 ACGATG 11999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| || | || || || || || || | Sbjct 16028 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 15969 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | ||||| | Sbjct 15968 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 15909 Query 76969 TTTGAGGAATTTCCCA 76984 | || | |||||||| Sbjct 15908 TCTGGGAGATTTCCCA 15893 >seq25901 Length=46880 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 11023 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 10964 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 10963 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 10905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694204318390240