Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq16976 114 3e-20 >seq16976 Length=50896 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || || ||||||||||| || | | || | |||||| Sbjct 49770 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49829 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || || |||||||| | ||||||||| || | | || |||||||| || Sbjct 49830 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 49889 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| ||| || || || || || Sbjct 49890 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATT 49946 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 49947 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || || || || ||||||||||| || | | || | |||||| Sbjct 50226 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50285 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || || |||||||| | ||||||||| || | | || |||||||| || Sbjct 50286 TCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50345 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| ||| || || || || || Sbjct 50346 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATT 50402 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 50403 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| ||||| || || ||||||||||| || | | || | |||||| Sbjct 49998 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50057 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | ||||||||| || | | || |||||||| || Sbjct 50058 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50117 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| ||| || || || || || Sbjct 50118 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 50174 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 50175 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 50209 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| ||||| || || ||||||||||| || | | || | |||||| Sbjct 50454 AGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 50513 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | ||||||||| || | | || |||||||| || Sbjct 50514 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 50573 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| ||| || || || || || Sbjct 50574 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTTATG 50630 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || | |||||||| |||| |||||| || Sbjct 50631 GTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATGTT 50668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153030024948461