Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 143 6e-29
seq19384 89.7 1e-12
>seq16976
Length=50896
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | |||||| || || ||||| | ||| ||| || ||||||||||||||||
Sbjct 49755 CCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49814
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| ||||| || || || || |||||||| | || || || |||
Sbjct 49815 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 49874
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| ||||| || || || || | || || ||||| | || ||
Sbjct 49875 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 49934
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 49935 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 49981
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | || || || || ||||| | ||| ||| || ||||||||||||||||
Sbjct 50211 CCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 50270
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| ||||| || || || || |||||||| | || || || |||
Sbjct 50271 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 50330
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||| ||||| || || || || | || || ||||| | || ||
Sbjct 50331 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50390
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 50391 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50437
Score = 122 bits (134), Expect = 2e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| || |||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 50018 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 50077
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| | || || || ||||| || |||||||| ||||| || || || || |
Sbjct 50078 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATT 50137
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| | || || ||||| ||||| ||||| || |||| ||||| ||
Sbjct 50138 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 50197
Query 283088 GAATATCTGCAT 283099
|| ||||||||
Sbjct 50198 AAAGATCTGCAT 50209
Score = 118 bits (130), Expect = 2e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| || |||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 50474 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 50533
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| | || || || ||||| || |||||||| ||||| || || || || |
Sbjct 50534 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATT 50593
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| | || || ||||| || || ||||| || |||| ||||| ||
Sbjct 50594 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCAC 50653
Query 283088 GAATATCTGCATTTT 283102
|| |||||||| ||
Sbjct 50654 AAAGATCTGCATGTT 50668
>seq19384
Length=5059
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 4056 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046021813691114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |