Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20 2014-06-25] 53,491 sequences; 1,127,622,302 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq16976 131 1e-25 >seq16976 Length=50896 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||| |||||||| || ||||| ||||||||||| || Sbjct 49979 CATGCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTC 50038 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || |||||||| | ||||||||||| Sbjct 50039 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGG 50098 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | |||||||| || || Sbjct 50099 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 50158 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 50159 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 50210 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||| || ||||| ||| ||||| ||||||||||| || Sbjct 50207 CATGCCACCTCTCAAACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC 50266 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| || || |||||||| | ||||||||||| Sbjct 50267 AGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGG 50326 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | |||||||| || || Sbjct 50327 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 50386 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 50387 AACCTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50438 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||| |||||||| || ||||| ||||||||||| || Sbjct 50435 CATGCCACCTCTCAAACGCAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTC 50494 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || |||||||| | ||||||||||| Sbjct 50495 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGG 50554 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| | | |||||||| || || Sbjct 50555 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 50614 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || | ||||||||| ||||| |||||| Sbjct 50615 AACCTCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACAAAGATCTGCATG 50666 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || ||||| ||| ||||| ||||||||||| || | Sbjct 49755 CCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49814 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || || |||||||| | ||||||||||| || Sbjct 49815 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 49874 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| || || ||||| | | |||||||| || || ||| Sbjct 49875 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 49934 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 49935 TCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 49982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359755714495947