Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 127 5e-24
>seq16976
Length=50896
Score = 127 bits (140), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || ||||| || || |||||||||||||| | ||| || |
Sbjct 49978 CAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTG--AGCCCAGTG 49921
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || || || |||||||| ||||| || || || || ||||
Sbjct 49920 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 49861
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || || ||||| |||||||| | || || | || || |||
Sbjct 49860 AGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAACA 49801
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || || ||||||||
Sbjct 49800 TCCAGAAGGAATCCACCCTTCATCTTGT 49773
Score = 127 bits (140), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || ||||| || || |||||||||||||| | ||| || |
Sbjct 50434 CAGATCTTTGTGAAGACCCTGACAGGCAAGACAATCACCCTCGAGGTTG--AGCCCAGTG 50377
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || || || |||||||| ||||| || || || || ||||
Sbjct 50376 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 50317
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || || ||||| |||||||| | || || | || || |||
Sbjct 50316 AGAGGTTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAACA 50257
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || || ||||||||
Sbjct 50256 TCCAGAAGGAATCCACCCTTCATCTTGT 50229
Score = 118 bits (130), Expect = 3e-21
Identities = 152/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 50206 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 50149
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || || || |||||||| ||||| || || || || ||||
Sbjct 50148 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 50089
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || || ||||| |||||||| | || || | || || |||
Sbjct 50088 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 50029
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || || || |||||
Sbjct 50028 TCCAGAAGGAATCTACCCTTCACCTTGT 50001
Score = 109 bits (120), Expect = 1e-18
Identities = 150/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || | || || || || || ||||||||||| | ||| || |
Sbjct 50662 CAGATCTTTGTGAAGACCATGACTGGCAAGACCATAACCCTCGAGGTTG--AGCCCAGTG 50605
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || || || |||||||| ||||| || || || || ||||
Sbjct 50604 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 50545
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || || ||||| |||||||| | || || | || || |||
Sbjct 50544 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 50485
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || || || |||||
Sbjct 50484 TCCAGAAGGAATCTACCCTTCACCTTGT 50457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202906218684254
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |