Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balearica_20regulorum_20gibbericeps_20[refseq_20GCF_5F000709895.1_20
2014-06-25] 53,491 sequences; 1,127,622,302 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq16976 125 7e-24
>seq16976
Length=50896
Score = 125 bits (138), Expect = 7e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | || || | ||| ||||| || ||| |||||||| ||||| |||||
Sbjct 49751 ACAGCCACCCCTCAGGCGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC 49810
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| |||||||| | || || ||||||||||| ||||| |||| | ||| || || |
Sbjct 49811 AGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGG 49870
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| || ||||||||| |||||| ||||| | | ||||| || | |||
Sbjct 49871 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 49930
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| | || || || || || ||||| ||||| || || |||||||||
Sbjct 49931 AACCTCGAGGGTGATTGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 49982
Score = 125 bits (138), Expect = 7e-24
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706
||| | ||| ||||| || ||| |||||||| ||||| ||||| || |||||||| |
Sbjct 50222 ACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 50281
Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766
|| || ||||||||||| ||||| |||| | ||| || || | ||||| || |||||
Sbjct 50282 ATCTTCTAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTT 50341
Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826
|||| |||||| ||||| | | ||||| || | ||| ||||| | || ||
Sbjct 50342 GTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 50401
Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || ||||| ||||| || || |||||||||
Sbjct 50402 TGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50438
Score = 120 bits (132), Expect = 3e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|||||||| ||||| ||||| || |||||||| | || || ||||||||||| |||||
Sbjct 50475 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 50534
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | ||| || || | ||||| || ||||||||| |||||| ||||| |
Sbjct 50535 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 50594
Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| ||||| || | ||| ||||| | ||||| || || || |||| ||||| ||
Sbjct 50595 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTTATGGTCTTGCCAGTCATGGTCTTCACA 50654
Query 41852 AAAATCTGCATGTT 41865
|| |||||||||||
Sbjct 50655 AAGATCTGCATGTT 50668
Score = 116 bits (128), Expect = 3e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|||||||| ||||| ||||| || |||||||| | || || ||||||||||| |||||
Sbjct 50019 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 50078
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
|||| | ||| || || | ||||| || ||||||||| |||||| ||||| |
Sbjct 50079 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 50138
Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| ||||| || | ||| ||||| | || || || || || ||||| ||||| ||
Sbjct 50139 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 50198
Query 41852 AAAATCTGCATG 41863
|| |||||||||
Sbjct 50199 AAGATCTGCATG 50210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461994886209200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |