Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23237 113 3e-20 seq21600 104 2e-17 >seq23237 Length=6024 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| |||||||||| | |||||| ||| ||| ||||| || ||||||||||| Sbjct 2186 CTTGAGCTCCCTGCTGAGAACTATATTAATCCTGTTTTTCAAAGGACGATTCTTCTCAGG 2127 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 2126 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 2077 >seq21600 Length=11202 Score = 104 bits (114), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | |||||| | Sbjct 8991 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCTCCCT 9050 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||||| | ||||| | || | |||||||| |||||||||| Sbjct 9051 CTTCTCTGGTGCTAAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 9110 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || ||||||||| | ||||| || || | ||| |||| || Sbjct 9111 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAC 9168 Query 102212 AGT 102214 ||| Sbjct 9169 AGT 9171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360977098055507