Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 129 5e-25
seq40441 102 7e-17
>seq27582
Length=3938
Score = 129 bits (142), Expect = 5e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||| | ||| | || ||||| || || |||||||| ||| || |||||| |||
Sbjct 2352 CAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 2411
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || ||||| |||| || | ||||||||||||||| ||||| ||||||||
Sbjct 2412 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 2471
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| || ||| ||||||| ||| | ||
Sbjct 2472 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 2531
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 2532 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2565
Score = 129 bits (142), Expect = 5e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||||||| | || ||||| || || |||||||||||| || ||||| ||
Sbjct 3492 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3551
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || ||||| |||| || | ||||||||||||||| ||||| ||||||||
Sbjct 3552 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3611
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | |||||| || ||| ||||||| ||| | ||
Sbjct 3612 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 3671
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 3672 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3705
Score = 120 bits (132), Expect = 3e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||||||| | || ||||| || ||||||||||| ||| || |||||| ||
Sbjct 3036 CAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTC 3095
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || ||||| |||| || | ||||||||| ||||| ||||| ||||||||
Sbjct 3096 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 3155
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| || ||| || || | || | ||
Sbjct 3156 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3215
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 3216 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3249
Score = 120 bits (132), Expect = 3e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||||||| | || ||||| || || |||||||||||| || ||||| ||
Sbjct 3264 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3323
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || ||||| |||| || | ||||||||||||||| ||||| ||||||||
Sbjct 3324 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 3383
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| || ||| || || | || | ||
Sbjct 3384 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGT 3443
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 3444 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3477
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || |||||| || || ||||| || |||
Sbjct 2824 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCA 2883
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || | ||||||||||||||| ||||| |||||||| || || ||
Sbjct 2884 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2943
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| || ||| ||||||| ||| | || ||||| ||||| ||
Sbjct 2944 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3003
Query 118722 TTTACAAAAATCTGCATG 118739
|| ||||| |||||||||
Sbjct 3004 TTCACAAAGATCTGCATG 3021
>seq40441
Length=3214
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||| | ||| | || ||||| || || |||||||| || || || || |||
Sbjct 594 CAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 535
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || |||||| |||| || | |||||||||||| || ||||| ||||||||
Sbjct 534 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 475
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | |||||| || ||| ||||| | || | ||
Sbjct 474 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGT 415
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 414 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 381
Score = 102 bits (112), Expect = 7e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||| | ||||| || ||||| || || |||||||| || || || || |||
Sbjct 822 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATC 763
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| ||||| || |||||| |||| || | |||||||||||| || ||||| ||||||||
Sbjct 762 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 703
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | |||||| | ||| || || | ||| | ||
Sbjct 702 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGT 643
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| ||||| || || ||||| |||||||||
Sbjct 642 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 609
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||| || || || || ||| || |||||
Sbjct 356 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGC 297
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| |||||| |||| || | |||||||||||| || ||||| |||||||| || ||
Sbjct 296 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTA 237
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | || | |||||| || ||| ||||| | || | || ||||| |||
Sbjct 236 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTC 177
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| ||||||||
Sbjct 176 AGGGTCTTCACAAAGATCTGCAT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433501228065844
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