Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq12919 93.3 8e-14 >seq12919 Length=70795 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 40405 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCCTT 40346 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || || ||||| Sbjct 40345 CCCTAAATGGATGCACTGGGGTGTGATTTTCTATGCTGTCACCTTCATTTTCCTCTTTGG 40286 Query 52305 TAACTTCTATTTTAGAACATACAAGA 52330 ||||||||| | | ||||| |||| Sbjct 40285 TAACTTCTACTACCGGACATATAAGA 40260 Score = 89.7 bits (98), Expect = 9e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||| ||| | ||| | ||||| ||||| || ||||| | |||||||| Sbjct 40836 GCTTTTTTTGGAGCCCAGATGAATGCATTTATTCATGTCATAATGTATATGTATTATGGA 40777 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||| ||||| || |||||||| || || | || || Sbjct 40776 TTAGCTGCCTGTGGCCCTAAATTTCAG-AAGTACCTGTGGTGGAAGCGATACTTGACCAT 40718 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 40717 ATTGCAATTGGTA 40705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922478356710280