Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq41089 111 1e-19 seq35559 82.4 7e-11 >seq41089 Length=22409 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 16029 AAAAATCGGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 15970 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 | ||||| ||||| ||| ||||||||||||||||||||||||| |||||||| |||| Sbjct 15969 GGTATTCCGAAACTCGCTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATATTCTCCA 15910 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 15909 TGAAATCAAAAGGATTTTCTG 15889 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||| Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 10806 ACCACTCTCTCACC 10793 >seq35559 Length=19442 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| |||||||| || || || Sbjct 4217 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTG 4158 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 4157 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462152067380200