Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq59352 199 3e-46 seq23398 104 2e-17 >seq59352 Length=547 Score = 199 bits (220), Expect = 3e-46 Identities = 359/525 (68%), Gaps = 0/525 (0%) Strand=Plus/Minus Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | || ||||| | |||| | ||||| ||| |||| | || || || Sbjct 547 CTCAACTGCATGCAGGATTTGCTGCGGAGCCCCGTGCCGTGGCGGTACATCCTCAACACC 488 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 || || || || |||||||| |||||||| |||||||| |||| ||||| ||| || || Sbjct 487 TGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATTGTCCATGCCCTGAAGTTGCTG 428 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119 |||| ||||||| |||||||| ||| || || | ||| | | | ||||||| Sbjct 427 CAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCATCAAGAGAGAGCGCTGGAGG 368 Query 108120 TACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCT 108179 |||| | | ||| || | | | || || || | ||| || || || Sbjct 367 TACCACCACAGAGTGGGGGAGTCCATCTCCCGGACAGTCACGGAGAAACTGCCGCCACCC 308 Query 108180 GATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAA 108239 | || ||||||||||| || | || || | |||| | | || |||||||| || Sbjct 307 CACAACCAGCCCATGTTCACGGGCAGCGCGTACATCGTGGTCACGCGTGCCTTTGTGCAG 248 Query 108240 CATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGC 108299 || || | || ||||| | |||| || | | || |||| ||| |||||||| ||| Sbjct 247 CACATCCTTGAGAACCCCAGGGCCCAGCGATTCCTCGAGTGGGCCAAGGACACCTACAGC 188 Query 108300 CCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCT 108359 || ||||| ||| ||||||||||||| | || || | |||| ||| | || || Sbjct 187 CCTGACGAGCACGTCTGGGCCACCCTCAATCGCATGCCTGGCGTGCCGGGCGCCGTGCCC 128 Query 108360 AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAG 108419 | || ||||| ||| |||| ||||||| ||| | || | || |||||||||||| Sbjct 127 CCCAACGACAAGTTCCACCTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAAGTGGCAG 68 Query 108420 TACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 |||| ||||| || ||||| ||| || || || |||||||| Sbjct 67 TACCTGGAGGGTGACACCAGCAAGGGCGCACCCTACTCACCCTGC 23 >seq23398 Length=123290 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||||||||| || ||||| | Sbjct 119515 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTCTGGGCAACAATTCAGAGAA 119456 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||||| ||| |||||||| | | || |||||| Sbjct 119455 -TCCCTGAAGTCCCAGGTGCGGTTCCGTCTAGTG---CCAAGTATGATGTTTCTGACATG 119400 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | || | ||||| | |||||||||||||| || || || || || || || Sbjct 119399 AACGCGCTGCCCAGGTTTATCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCC 119340 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | |||| | | |||| ||| ||||| || ||| Sbjct 119339 CCCTACCCACCGTGCAGTGGAGTTCATCTTCGCTCTGTCTGTGTTTTCGGGGTGGGAGAC 119280 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 119279 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 119232 Score = 104 bits (114), Expect = 2e-17 Identities = 231/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || |||||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 120104 CCTCTCAGCAAAGAAGAAGCAGAATTTCCAATTGCGTACTCAATAGTGGTTTATCACAAA 120045 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | |||||| | Sbjct 120044 ATTGAGATGCTTGACAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGTATT 119985 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | ||| || |||| || | || || Sbjct 119984 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCGGCTGTGAAGGGAATAGTCTCATGT 119925 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 119924 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 119865 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| ||||| | || ||| || | | | | ||||| | Sbjct 119864 GTGCAGGCGGACATTAACTGCATGAAAGACCT-CTACAG-GCGAAATTCAAACTGGAAAT 119807 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 119806 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 119764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348004548544818