Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq59352 199 3e-46
seq23398 104 2e-17
>seq59352
Length=547
Score = 199 bits (220), Expect = 3e-46
Identities = 359/525 (68%), Gaps = 0/525 (0%)
Strand=Plus/Minus
Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999
|| ||||| ||| | || ||||| | |||| | ||||| ||| |||| | || || ||
Sbjct 547 CTCAACTGCATGCAGGATTTGCTGCGGAGCCCCGTGCCGTGGCGGTACATCCTCAACACC 488
Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059
|| || || || |||||||| |||||||| |||||||| |||| ||||| ||| || ||
Sbjct 487 TGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATTGTCCATGCCCTGAAGTTGCTG 428
Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119
|||| ||||||| |||||||| ||| || || | ||| | | | |||||||
Sbjct 427 CAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCATCAAGAGAGAGCGCTGGAGG 368
Query 108120 TACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCT 108179
|||| | | ||| || | | | || || || | ||| || || ||
Sbjct 367 TACCACCACAGAGTGGGGGAGTCCATCTCCCGGACAGTCACGGAGAAACTGCCGCCACCC 308
Query 108180 GATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAA 108239
| || ||||||||||| || | || || | |||| | | || |||||||| ||
Sbjct 307 CACAACCAGCCCATGTTCACGGGCAGCGCGTACATCGTGGTCACGCGTGCCTTTGTGCAG 248
Query 108240 CATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGC 108299
|| || | || ||||| | |||| || | | || |||| ||| |||||||| |||
Sbjct 247 CACATCCTTGAGAACCCCAGGGCCCAGCGATTCCTCGAGTGGGCCAAGGACACCTACAGC 188
Query 108300 CCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCT 108359
|| ||||| ||| ||||||||||||| | || || | |||| ||| | || ||
Sbjct 187 CCTGACGAGCACGTCTGGGCCACCCTCAATCGCATGCCTGGCGTGCCGGGCGCCGTGCCC 128
Query 108360 AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAG 108419
| || ||||| ||| |||| ||||||| ||| | || | || ||||||||||||
Sbjct 127 CCCAACGACAAGTTCCACCTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAAGTGGCAG 68
Query 108420 TACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464
|||| ||||| || ||||| ||| || || || ||||||||
Sbjct 67 TACCTGGAGGGTGACACCAGCAAGGGCGCACCCTACTCACCCTGC 23
>seq23398
Length=123290
Score = 104 bits (114), Expect = 2e-17
Identities = 198/288 (69%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| |||||||| || ||||| || || |||||||||| || ||||| |
Sbjct 119515 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTCTGGGCAACAATTCAGAGAA 119456
Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATG 108389
||| || | | || || | ||||| ||| |||||||| | | || ||||||
Sbjct 119455 -TCCCTGAAGTCCCAGGTGCGGTTCCGTCTAGTG---CCAAGTATGATGTTTCTGACATG 119400
Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449
| || | ||||| | |||||||||||||| || || || || || || ||
Sbjct 119399 AACGCGCTGCCCAGGTTTATCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCC 119340
Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509
|| || |||| ||| |||| | |||| | | |||| ||| ||||| || |||
Sbjct 119339 CCCTACCCACCGTGCAGTGGAGTTCATCTTCGCTCTGTCTGTGTTTTCGGGGTGGGAGAC 119280
Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||| ||||||| || | ||||| ||| |||| || || |||||||||
Sbjct 119279 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 119232
Score = 104 bits (114), Expect = 2e-17
Identities = 231/343 (67%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || |||||||| ||| || || ||||| ||||| || ||||| || | ||
Sbjct 120104 CCTCTCAGCAAAGAAGAAGCAGAATTTCCAATTGCGTACTCAATAGTGGTTTATCACAAA 120045
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | |||| | || || || | | |||||||||||||| | |||||| |
Sbjct 120044 ATTGAGATGCTTGACAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGTATT 119985
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || ||||| ||||| |||| | ||| || |||| || | || ||
Sbjct 119984 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCGGCTGTGAAGGGAATAGTCTCATGT 119925
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | || || ||||| || ||| |||
Sbjct 119924 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 119865
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
||||| || ||| | ||||| ||| ||||| | || ||| || | | | | ||||| |
Sbjct 119864 GTGCAGGCGGACATTAACTGCATGAAAGACCT-CTACAG-GCGAAATTCAAACTGGAAAT 119807
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
|| || | || || || | ||||| || |||||||||||
Sbjct 119806 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 119764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348004548544818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |