Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 123 2e-23
seq27582 109 5e-19
seq40441 100 3e-16
>seq1566
Length=12574
Score = 123 bits (136), Expect = 2e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| |||||||| || ||||| || ||||||||||| || || || |
Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
| |||| || ||||||||| || || ||||| || |||||||||| |||||| || |
Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||| ||||| ||||||||| ||||| ||
Sbjct 3008 TGCCGGTCTCCGTCTGCGACTCAATGATAGC 3038
Score = 102 bits (112), Expect = 7e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
||||||| | |||| || ||||| || ||||| || || |||| || || | ||| |
Sbjct 4818 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTC 4877
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
|| |||||| || || |||||||| || | || | ||| || || | |||| |||||
Sbjct 4878 GCTGCTCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCC 4937
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||||| ||| || || || |||||||
Sbjct 4938 ACGGCTCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546
||||| ||| || || || ||||| ||||| ||||||||||||||||| || || ||||
Sbjct 5454 CCGGTACCTTGTTTCCACCTTGATCCACGTAGCGGGCCGTGTTGTTGTAGACCCTCAGCA 5513
Query 23547 TCGGCACGAGACCGTTGGA 23565
|||| ||||| ||||||||
Sbjct 5514 TCGGAACGAGCCCGTTGGA 5532
>seq27582
Length=3938
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 2565 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 2506
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || || | || ||||||||||||| | || ||||| ||
Sbjct 2505 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 2446
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||| | || || || |||||||| ||| ||||||| | | | ||| || ||| || |
Sbjct 2445 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 2387
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||| || || || || || || || || || || | |||||||| ||
Sbjct 2386 ACATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2338
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 3021 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 2962
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || ||||| ||
Sbjct 2961 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 2902
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| |||||||| ||| || ||| || ||
Sbjct 2901 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 2842
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || ||||| || || | ||||||| ||
Sbjct 2841 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGG 2794
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 3707 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3648
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | || | || || | || ||||||||||||| | || |||||
Sbjct 3647 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 3588
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || || |||||||| ||| |||||||| || || ||||||
Sbjct 3587 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTAC 3528
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || |||| ||
Sbjct 3527 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGCT 3493
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || ||||| | || ||||| ||
Sbjct 3249 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 3190
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || || | || ||||||||||||| | || || || ||
Sbjct 3189 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 3130
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| |||||||| ||| || ||| || ||
Sbjct 3129 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 3070
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || || || || |||| ||
Sbjct 3069 CATTCAGAAGGAGTCCACGCTGCACTTGGTGCT 3037
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || ||||| | || ||||| ||
Sbjct 3477 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 3418
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || || | || ||||||||||||| | || ||||| ||
Sbjct 3417 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 3358
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| |||||||| || || |||||| ||
Sbjct 3357 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAA 3298
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || |||| ||
Sbjct 3297 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCT 3265
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || ||||| | || ||||| ||
Sbjct 2793 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 2734
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || || | || ||||||||||||| | || || || ||
Sbjct 2733 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 2674
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || |||||||| ||| ||||||| | || || ||| || ||
Sbjct 2673 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTACAA 2614
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || || || ||
Sbjct 2613 CATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 2581
>seq40441
Length=3214
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 609 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCTAG 668
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || ||||| ||
Sbjct 669 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCA 728
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || ||||||||||| ||| ||||||| | || || || || ||
Sbjct 729 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 788
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || || || || || || || | |||||||| ||||
Sbjct 789 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGTA 838
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/234 (70%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||||| ||||| || || || ||||| ||||| ||||| || ||||| | || |||||
Sbjct 148 ATCAAA-ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGA 206
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
|| |||| | || | || || | || ||||||||||||| | || ||
Sbjct 207 GCCCAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCC 266
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365
||| |||||| | || || ||||||||||| ||| ||||||| | || || ||
Sbjct 267 CGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGA 326
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| || || || || || || ||||| || || | |||||||| ||
Sbjct 327 CTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 380
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||| ||||| || ||||| | || ||||| ||
Sbjct 381 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCCAG 440
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || | || ||||||||||||| | || ||||| ||
Sbjct 441 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 500
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || ||||||||||| ||| ||||||| | || || || || ||
Sbjct 501 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 560
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || ||||| || || || | |||||||| ||
Sbjct 561 CATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGCCTGAGGGGTGG 608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445419499015440
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