Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1566 123 2e-23 seq27582 109 5e-19 seq40441 100 3e-16 >seq1566 Length=12574 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || ||| |||||||| || ||||| || ||||||||||| || || || | Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || || ||||| || |||||||||| |||||| || | Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| ||||| ||||||||| ||||| || Sbjct 3008 TGCCGGTCTCCGTCTGCGACTCAATGATAGC 3038 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| | |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 4818 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTC 4877 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || |||||| || || |||||||| || | || | ||| || || | |||| ||||| Sbjct 4878 GCTGCTCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCC 4937 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||||| ||| || || || ||||||| Sbjct 4938 ACGGCTCCAGGTAAATGGCGAAGGCCCCGGGTCTCT 4973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 ||||| ||| || || || ||||| ||||| ||||||||||||||||| || || |||| Sbjct 5454 CCGGTACCTTGTTTCCACCTTGATCCACGTAGCGGGCCGTGTTGTTGTAGACCCTCAGCA 5513 Query 23547 TCGGCACGAGACCGTTGGA 23565 |||| ||||| |||||||| Sbjct 5514 TCGGAACGAGCCCGTTGGA 5532 >seq27582 Length=3938 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 2565 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 2506 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||||| | || ||||| || Sbjct 2505 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 2446 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| ||| ||||||| | | | ||| || ||| || | Sbjct 2445 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 2387 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || || || || || || || | |||||||| || Sbjct 2386 ACATCCAGAAGGAGTCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 2338 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 3021 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 2962 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || ||||| || Sbjct 2961 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 2902 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| ||| || ||| || || Sbjct 2901 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 2842 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | ||||||| || Sbjct 2841 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGG 2794 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 3707 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3648 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || ||||| Sbjct 3647 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 3588 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| |||||||| || || |||||| Sbjct 3587 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTAC 3528 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 3527 AACATCCAGAAGGAGTCCACCCTGCACTTGGTGCT 3493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 3249 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 3190 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||||| | || || || || Sbjct 3189 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 3130 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| ||| || ||| || || Sbjct 3129 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCCGACTACAA 3070 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || || |||| || Sbjct 3069 CATTCAGAAGGAGTCCACGCTGCACTTGGTGCT 3037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 3477 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 3418 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||||| | || ||||| || Sbjct 3417 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 3358 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || |||||| || Sbjct 3357 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCCGATTACAA 3298 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 3297 CATCCAGAAGGAGTCCACCCTGCACTTGGTGCT 3265 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 2793 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTTGAGCCCAG 2734 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||||||| | || || || || Sbjct 2733 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 2674 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| | || || ||| || || Sbjct 2673 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTACAA 2614 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || || || || Sbjct 2613 CATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 2581 >seq40441 Length=3214 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 609 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCTAG 668 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || ||||| || Sbjct 669 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCA 728 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || || || || || Sbjct 729 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 788 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || || || || | |||||||| |||| Sbjct 789 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGTA 838 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| || || || ||||| ||||| ||||| || ||||| | || ||||| Sbjct 148 ATCAAA-ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGA 206 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || |||| | || | || || | || ||||||||||||| | || || Sbjct 207 GCCCAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCC 266 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||| |||||| | || || ||||||||||| ||| ||||||| | || || || Sbjct 267 CGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGA 326 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || || || ||||| || || | |||||||| || Sbjct 327 CTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 381 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCCAG 440 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || ||||| || Sbjct 441 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 500 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || || || || || Sbjct 501 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 560 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || ||||| || || || | |||||||| || Sbjct 561 CATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGCCTGAGGGGTGG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445419499015440