Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq41089 120 4e-22
seq35559 96.9 4e-15
seq1566 93.3 5e-14
>seq41089
Length=22409
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| |
Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||| ||||| ||||| |||||||||||||
Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809
Query 33724 CAATAAGTCTCTCTCC 33739
||| | |||||| ||
Sbjct 10808 CAACCACTCTCTCACC 10793
>seq35559
Length=19442
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| || || | ||| |||||||| ||||| || ||||||| || | || |
Sbjct 2945 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 2886
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || || || || || |||||||||||||| ||||| ||||| |
Sbjct 2885 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACG 2826
Query 33724 C 33724
|
Sbjct 2825 C 2825
>seq1566
Length=12574
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
|||| ||||| ||||||||||||||||| || |||| || |||||||| | || ||
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386
||||| || || || ||||| || || || || ||| | | || || |||||||||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 63387 TCCAAGTATATGGC 63400
|||| ||| |||||
Sbjct 4943 TCCAGGTAAATGGC 4956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629327468070960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |