Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq23178 120 4e-22 seq41089 114 2e-20 seq1566 93.3 6e-14 >seq23178 Length=8235 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | | ||| || ||||||||||||||||| ||| Sbjct 1276 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1335 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 1336 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAA 1395 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||||| Sbjct 1396 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAGC 1455 Query 9408 TCCACTGTTTCACT 9421 |||| ||| ||||| Sbjct 1456 TCCATTGTCTCACT 1469 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | || |||||||| || ||||| Sbjct 2574 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTGTATGCAGTGAGTCCAAGA 2633 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| ||||||| ||||| Sbjct 2634 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCAAAGAAA 2687 >seq41089 Length=22409 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || ||||| || || ||||| ||||| ||||||| Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 10808 CAACCACTCTCTCACC 10793 >seq1566 Length=12574 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 |||| ||||| ||||||||||||||||| || |||| || | |||||||| || || Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || || || || ||| | | || || ||||||||| Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942 Query 66180 TCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 4943 TCCAGGTAAATGGC 4956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657660601699880