Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq23178 120 4e-22
seq41089 114 2e-20
seq1566 93.3 6e-14
>seq23178
Length=8235
Score = 120 bits (132), Expect = 4e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || | |||| | | | ||| || ||||||||||||||||| |||
Sbjct 1276 TATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1335
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| | || | | || |||||||| || | || || || || |
Sbjct 1336 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAA 1395
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
|| |||||||| ||||| ||||| ||||| | ||| || || ||||| | ||||||
Sbjct 1396 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAGC 1455
Query 9408 TCCACTGTTTCACT 9421
|||| ||| |||||
Sbjct 1456 TCCATTGTCTCACT 1469
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||| ||||||||||| || | || |||||||| || |||||
Sbjct 2574 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTGTATGCAGTGAGTCCAAGA 2633
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593
|| || |||||||| || || || ||||||| |||| ||||||| |||||
Sbjct 2634 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCAAAGAAA 2687
>seq41089
Length=22409
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || ||||| || || ||||| ||||| |||||||
Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 10808 CAACCACTCTCTCACC 10793
>seq1566
Length=12574
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
|||| ||||| ||||||||||||||||| || |||| || | |||||||| || ||
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179
||||| || || || ||||| || || || || ||| | | || || |||||||||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 66180 TCCAAGTATATGGC 66193
|||| ||| |||||
Sbjct 4943 TCCAGGTAAATGGC 4956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657660601699880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |