Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq41089 105 6e-18 seq35559 86.0 6e-12 >seq41089 Length=22409 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || ||||| || || || |||||||||||||| | Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809 Query 14014 C 14014 | Sbjct 10808 C 10808 >seq35559 Length=19442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 |||| |||| | | |||||| || |||||||| | || |||||||| || ||||||| Sbjct 900 TCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGT 841 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||| || ||||| || ||||| || || | |||||| | ||||||||| Sbjct 840 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 786 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||||| |||| || ||||||||||| || || Sbjct 4217 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTG 4158 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| || || |||||||| || ||||| ||||| Sbjct 4157 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479354669673800