Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 91.5 1e-13
>seq27582
Length=3938
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| || | ||| |||||| || | |||||||||||||| || ||| |||| ||
Sbjct 3267 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 3326
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| || ||||| ||||| |||| | ||| ||||||| || | ||||| || ||
Sbjct 3327 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTG 3386
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | | | ||||| | | ||| || || | || ||||| ||
Sbjct 3387 GATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTT 3446
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAt 43109
|| || || || |||||||| || |||||
Sbjct 3447 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| || | ||| |||||| || | |||||||||||||| || ||| |||| ||
Sbjct 3495 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 3554
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| || ||||| ||||| |||| | ||| ||||||| || | ||||| || ||
Sbjct 3555 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTG 3614
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| ||||| | | ||| || || | || || || ||
Sbjct 3615 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 3674
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAtttt 43112
|| || || || |||||||| || ||||| ||
Sbjct 3675 GCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381080233074906
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |