Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq27582 91.5 1e-13 >seq27582 Length=3938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | |||||||||||||| || ||| |||| || Sbjct 3267 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 3326 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||| ||||| |||| | ||| ||||||| || | ||||| || || Sbjct 3327 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTG 3386 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | | | ||||| | | ||| || || | || ||||| || Sbjct 3387 GATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTT 3446 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAt 43109 || || || || |||||||| || ||||| Sbjct 3447 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 3476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| |||||| || | |||||||||||||| || ||| |||| || Sbjct 3495 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 3554 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||| ||||| |||| | ||| ||||||| || | ||||| || || Sbjct 3555 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTG 3614 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || | ||| ||||| | | ||| || || | || || || || Sbjct 3615 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 3674 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAtttt 43112 || || || || |||||||| || ||||| || Sbjct 3675 GCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381080233074906