Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq41089 111 1e-19
seq35559 93.3 4e-14
>seq41089
Length=22409
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || || || || || || ||||| || || | || ||
Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||||||||||||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807
Query 13295 ATCAACCTTTCACC 13308
| || || |||||
Sbjct 10806 ACCACTCTCTCACC 10793
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/140 (74%), Gaps = 4/140 (3%)
Strand=Plus/Minus
Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861
||||||| ||| |||| || |||| || | || ||| | |||||||| |
Sbjct 16029 AAAAATCGGCATCCAGAGTGAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAACG 15972
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
||| ||||| ||||| || ||||| || |||||||||||||||| |||||||| ||
Sbjct 15971 TTGGTATTCCGAAACTCGCTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATATTCTC 15912
Query 12922 CATAAAATCGAAAGGATTTT 12941
||| ||||| ||||||||||
Sbjct 15911 CATGAAATCAAAAGGATTTT 15892
>seq35559
Length=19442
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || ||||| || || || ||||| | |||| ||| ||
Sbjct 2943 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 2884
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||| || | ||||| || || || || || |||||||| |||||||||||||||
Sbjct 2883 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACGCT 2824
Query 13295 A 13295
|
Sbjct 2823 A 2823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430655389006314
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |