Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq41089 111 1e-19 seq35559 93.3 4e-14 >seq41089 Length=22409 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 10926 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10867 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| |||||||||||||| || ||||||||||| ||||| || Sbjct 10866 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGGCA 10807 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 10806 ACCACTCTCTCACC 10793 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861 ||||||| ||| |||| || |||| || | || ||| | |||||||| | Sbjct 16029 AAAAATCGGCATCCAGAGTGAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAACG 15972 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| ||||| ||||| || ||||| || |||||||||||||||| |||||||| || Sbjct 15971 TTGGTATTCCGAAACTCGCTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATATTCTC 15912 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 15911 CATGAAATCAAAAGGATTTT 15892 >seq35559 Length=19442 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || ||||| | |||| ||| || Sbjct 2943 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 2884 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || || || || |||||||| ||||||||||||||| Sbjct 2883 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACGCT 2824 Query 13295 A 13295 | Sbjct 2823 A 2823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430655389006314