Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq15132 152 7e-32
seq40134 127 3e-24
>seq15132
Length=16380
Score = 152 bits (168), Expect = 7e-32
Identities = 214/298 (72%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || || || ||||| ||||| |||||| |||| || ||| | | |||
Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| |||||||||||||| |||||||| | ||||
Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||| || | || |||| || || || ||||| ||||| || || | ||| | |||
Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917
| ||||| |||||||| || || |||||||| | |||||| || | ||||| ||||
Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 11533
Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
| || || || ||||| ||||| | || || || || ||||| ||||||||||
Sbjct 11534 ATCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTG 11591
Score = 104 bits (114), Expect = 3e-17
Identities = 168/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
|| |||| ||| || || || || || || ||| |||| || ||||| || |||| ||
Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | ||||||||| || ||||| || ||||| |||||||| | || ||
Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || || |||| | ||| | || || | | || ||
Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493
Query 9862 TG 9863
||
Sbjct 13494 TG 13495
Score = 95.1 bits (104), Expect = 2e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| ||||| | || || || || || | || || || || |||||| |||
Sbjct 14966 ACCTTTAACCCCCATGGGCGTGGGGCAGTCCAGCCCTACTGGGGGAAGGCTCCTTGTGTA 15025
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||| |||||||| |||||||||||||| || ||||| || |||||| | ||
Sbjct 15026 GTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTATAATCGTAATCGCTGTTGTAAGTCGG 15085
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
|||||||||||||| | ||||| ||||| ||| ||||
Sbjct 15086 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAA 15125
>seq40134
Length=18165
Score = 127 bits (140), Expect = 3e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 9607 GTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGA 9666
|| || ||||| | |||||| |||| ||||| || || || ||||||||||| |||
Sbjct 5114 GTCTCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGGA 5055
Query 9667 TGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTAC 9726
|| ||||||||||| | ||||| || | |||||| || | ||||||| || ||||||
Sbjct 5054 TGCTCTCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTAC 4995
Query 9727 ATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCG 9786
|| ||| || |||| ||| ||||| |||| || || | ||||| || | | | |
Sbjct 4994 ATGCAGAGTCCCGGCAGCAGCCCAAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTG 4935
Query 9787 GGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATT 9846
|| | | | || |||| |||||| ||| | |||| ||||| |||||| |||||
Sbjct 4934 GGGATGGCAGACGGGTAGACCATGTGAACCGGAGCATCGGTGACCATGGGGGGGTACATC 4875
Query 9847 TCACCGTC 9854
|| || ||
Sbjct 4874 TCTCCATC 4867
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || ||||||||||| || |||||||||||||| | || |
Sbjct 7364 TCTTAACTATCTCAAAGCCAGTTTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAG 7305
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||| ||||| || | ||| | ||||
Sbjct 7304 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGC 7245
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || ||||||| |||| || || | || || || | || |||||||
Sbjct 7244 TTTCCCCAAAAATACCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCA 7185
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 7184 GAGCATCAATGTCTCCATACAG 7163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707973417144080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |