Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq15132 152 7e-32 seq40134 127 3e-24 >seq15132 Length=16380 Score = 152 bits (168), Expect = 7e-32 Identities = 214/298 (72%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || || || ||||| ||||| |||||| |||| || ||| | | ||| Sbjct 11295 GGAAGGCAGCGAAGGGACAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAAGGAGGCAG 11354 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| |||||||||||||| |||||||| | |||| Sbjct 11355 TATTGATTATGTCAAAGCCCACTTTTCCACCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 11414 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || | || |||| || || || ||||| ||||| || || | ||| | ||| Sbjct 11415 AGCATATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCAATCTCCACCATGG 11474 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 11475 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 11533 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | || || || ||||| ||||| | || || || || ||||| |||||||||| Sbjct 11534 ATCGCATCAATATCTCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTG 11591 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| ||| || || || || || || ||| |||| || ||||| || |||| || Sbjct 13254 ATAAGTCTAGTAGTTTGGAAGAGCTGCTCATCATTCCACTCGGGATGCTCCTGTTTGAGG 13313 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | ||||||||| || ||||| || ||||| |||||||| | || || Sbjct 13314 ATGTCACAGACCCGGTTGTGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 13373 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | || || | | || || Sbjct 13374 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGTATGTGAGGGGGG 13433 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 13434 TAGATCATCTCAGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 13493 Query 9862 TG 9863 || Sbjct 13494 TG 13495 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| ||||| | || || || || || | || || || || |||||| ||| Sbjct 14966 ACCTTTAACCCCCATGGGCGTGGGGCAGTCCAGCCCTACTGGGGGAAGGCTCCTTGTGTA 15025 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||| |||||||| |||||||||||||| || ||||| || |||||| | || Sbjct 15026 GTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTATAATCGTAATCGCTGTTGTAAGTCGG 15085 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||||| ||| |||| Sbjct 15086 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAA 15125 >seq40134 Length=18165 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 9607 GTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGA 9666 || || ||||| | |||||| |||| ||||| || || || ||||||||||| ||| Sbjct 5114 GTCTCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGGA 5055 Query 9667 TGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTAC 9726 || ||||||||||| | ||||| || | |||||| || | ||||||| || |||||| Sbjct 5054 TGCTCTCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTAC 4995 Query 9727 ATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCG 9786 || ||| || |||| ||| ||||| |||| || || | ||||| || | | | | Sbjct 4994 ATGCAGAGTCCCGGCAGCAGCCCAAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTG 4935 Query 9787 GGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATT 9846 || | | | || |||| |||||| ||| | |||| ||||| |||||| ||||| Sbjct 4934 GGGATGGCAGACGGGTAGACCATGTGAACCGGAGCATCGGTGACCATGGGGGGGTACATC 4875 Query 9847 TCACCGTC 9854 || || || Sbjct 4874 TCTCCATC 4867 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||||||| || |||||||||||||| | || | Sbjct 7364 TCTTAACTATCTCAAAGCCAGTTTCTCCGCCGAACGTACTGGGTTTCCAGTACTCTGGAG 7305 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 7304 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCTATCTCCACCATGC 7245 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || ||||||| |||| || || | || || || | || ||||||| Sbjct 7244 TTTCCCCAAAAATACCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCA 7185 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 7184 GAGCATCAATGTCTCCATACAG 7163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707973417144080