Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq27582 129 5e-25 seq40441 109 5e-19 >seq27582 Length=3938 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||||| || || ||||| || | ||| || ||| | Sbjct 2338 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2397 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||||||| || || ||||||| | || |||||||| |||||| Sbjct 2398 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 2457 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || ||| |||||| | | || || Sbjct 2458 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACC 2517 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 2518 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2566 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||||||||||| || || ||||| || | ||| || ||| | Sbjct 3022 CCACCTCTGAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAC 3081 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| || |||||||| || || ||||||| | || |||||||| |||||| Sbjct 3082 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 3141 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || ||| |||||| | | || || Sbjct 3142 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3201 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || ||||| || || ||||||||||||||||||| Sbjct 3202 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 3250 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||||||||||| || || ||||| || | ||| |||||| | Sbjct 3250 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3309 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| | || |||||||| |||||| Sbjct 3310 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3369 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || ||| |||||| | | || || Sbjct 3370 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACT 3429 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || ||||| || || ||||||||||||||||||| Sbjct 3430 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 3478 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||||||||||| || || ||||| || | ||| |||||| | Sbjct 3478 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3537 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| | || |||||||| |||||| Sbjct 3538 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3597 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || | | |||||| | | || || Sbjct 3598 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 3657 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || ||||| || || |||||||||||||||||| Sbjct 3658 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3705 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| |||| ||| | |||| || || ||||| || | ||| || ||| | Sbjct 2794 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2853 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| || |||||||| || || ||||||| | || |||||||| |||||| Sbjct 2854 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 2913 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || | | |||||| | | || || Sbjct 2914 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 2973 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 2974 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 3022 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||| | ||||| || || ||||| || | ||| || ||| | Sbjct 2566 CCACCTCTGAGACGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2625 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||| |||||||| || || ||||||| | || |||||||| |||| Sbjct 2626 A--GGGTACGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 2683 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || || ||||| || ||| |||||| | | || | Sbjct 2684 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAA 2743 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||||| || || ||||| || || ||||||||||||||||||| Sbjct 2744 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2794 >seq40441 Length=3214 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||| | || || ||||| || | ||| || || | Sbjct 608 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 549 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||| |||||||| || || | ||||| | || |||||||| || | Sbjct 548 A--GGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 491 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || || ||||| || | | |||||| | | || | Sbjct 490 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 431 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | |||| ||||||||| || ||||| || || ||||||||||||||||||| Sbjct 430 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 380 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| | || |||||||| || ||||| ||||| || Sbjct 309 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 250 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | |||||| | | || || |||| |||||| Sbjct 249 GTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGAT 190 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||||||||| Sbjct 189 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 154 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||| | || || ||||| || | ||| || || | Sbjct 836 CCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 777 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||| |||||||| || || | ||||| | || |||||||| || | Sbjct 776 A--GGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 719 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || || ||||| ||| | | |||||| | || | Sbjct 718 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAA 659 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 658 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447942334184520