Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq41089 129 7e-25
seq35559 102 1e-16
seq1566 98.7 1e-15
>seq41089
Length=22409
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | ||| || || || ||||| ||||| ||||| |||||||||||||
Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809
Query 33446 CAATAAGTCTCTCTCC 33461
||| | |||||| ||
Sbjct 10808 CAACCACTCTCTCACC 10793
>seq35559
Length=19442
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| || ||||| ||||| || ||||||| || | || |
Sbjct 2945 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 2886
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || || || ||||| |||||||||||||| ||||| ||||| |
Sbjct 2885 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAACG 2826
Query 33446 C 33446
|
Sbjct 2825 C 2825
>seq1566
Length=12574
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275
|||| ||||| ||||||||||||||||| || |||| || |||||||||| || ||
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335
||||| || || || ||||| || || || || ||| | | || || |||||||||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 63336 TCCAAGTATATGGC 63349
|||| ||| |||||
Sbjct 4943 TCCAGGTAAATGGC 4956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622462414702120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |