Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq41089 114 2e-20
seq1566 98.7 1e-15
>seq41089
Length=22409
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 10928 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10869
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||||||||| | ||||| || || ||||| || || ||||| ||||| |||||||
Sbjct 10868 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAAAAGATGCCTTCAACTGCAGCAAAGG 10809
Query 32803 CAATAAGTCTCTCTCC 32818
||| | |||||| ||
Sbjct 10808 CAACCACTCTCTCACC 10793
>seq1566
Length=12574
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
|||| ||||| ||||||||||||||||| || |||| || |||||||||| || ||
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190
||||| || || || ||||| || || || || ||| | | || || |||||||||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 63191 TCCAAGTATATGGC 63204
|||| ||| |||||
Sbjct 4943 TCCAGGTAAATGGC 4956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633138899657200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |