Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 100 2e-16
seq40441 96.9 3e-15
>seq27582
Length=3938
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| ||| || |||||| |||||| || || || |||
Sbjct 2596 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 2655
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 2656 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2715
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| || | || ||||| ||||| ||
Sbjct 2716 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 2775
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 2776 TTCACAAAGATCTGCATG 2793
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| || || | ||| || || || ||||||||||| ||| || ||| || |||||
Sbjct 3040 ACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 3099
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|| || || ||||| |||| || | ||| || || |||||||||||||| |||||
Sbjct 3100 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 3159
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | || | |||||| ||| || || |||| || | || |||
Sbjct 3160 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTG 3219
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| ||||| || || ||||| |||||||||
Sbjct 3220 CCAGTCAGGGTCTTCACAAAGATCTGCATG 3249
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| ||| || ||| || |||||| || || || |||
Sbjct 2368 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCA 2427
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 2428 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2487
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 2488 ACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 2547
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 2548 TTCACAAAGATCTGCATG 2565
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| ||| || ||| || ||||| || || || |||
Sbjct 2824 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCA 2883
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 2884 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2943
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 2944 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3003
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 3004 TTCACAAAGATCTGCATG 3021
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||||||| || || || ||||| || || || |||
Sbjct 3508 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3567
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 3568 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3627
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 3628 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3687
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 3688 TTCACAAAGATCTGCATG 3705
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||||||| || || || ||||| || || || |||
Sbjct 3280 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3339
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 3340 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3399
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| || | || ||||| ||||| ||
Sbjct 3400 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 3459
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 3460 TTCACAAAGATCTGCATG 3477
>seq40441
Length=3214
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || |||||| |||||| || || || |||
Sbjct 578 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 519
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || | ||| || || || ||||||||||| ||||| ||||| ||
Sbjct 518 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 459
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | || | || ||||| ||||| ||
Sbjct 458 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTC 399
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 398 TTCACAAAGATCTGCATG 381
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || |||||| |||||| || || || |||
Sbjct 350 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 291
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || | ||| || || || ||||||||||| ||||| ||||| ||
Sbjct 290 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTC 231
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | || | || ||||| ||||| ||
Sbjct 230 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTC 171
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 170 TTCACAAAGATCTGCAT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419815620004284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |