Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq27582 100 2e-16 seq40441 96.9 3e-15 >seq27582 Length=3938 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| |||||| || || || ||| Sbjct 2596 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 2655 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 2656 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2715 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| || | || ||||| ||||| || Sbjct 2716 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 2775 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 2776 TTCACAAAGATCTGCATG 2793 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| || || || ||||||||||| ||| || ||| || ||||| Sbjct 3040 ACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCC 3099 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| |||| || | ||| || || |||||||||||||| ||||| Sbjct 3100 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 3159 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| ||| || || |||| || | || ||| Sbjct 3160 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTG 3219 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || ||||| ||||||||| Sbjct 3220 CCAGTCAGGGTCTTCACAAAGATCTGCATG 3249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||| || |||||| || || || ||| Sbjct 2368 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCA 2427 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 2428 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2487 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 2488 ACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 2547 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 2548 TTCACAAAGATCTGCATG 2565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||| || ||||| || || || ||| Sbjct 2824 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCA 2883 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 2884 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2943 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 2944 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3003 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3004 TTCACAAAGATCTGCATG 3021 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| || || || ||||| || || || ||| Sbjct 3508 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3567 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 3568 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3627 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 3628 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3687 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3688 TTCACAAAGATCTGCATG 3705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| || || || ||||| || || || ||| Sbjct 3280 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3339 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 3340 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3399 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| || | || ||||| ||||| || Sbjct 3400 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 3459 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3460 TTCACAAAGATCTGCATG 3477 >seq40441 Length=3214 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| |||||| || || || ||| Sbjct 578 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 519 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 518 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 459 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||| ||||| || Sbjct 458 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTC 399 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 398 TTCACAAAGATCTGCATG 381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| |||||| || || || ||| Sbjct 350 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCA 291 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 290 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTC 231 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||| ||||| || Sbjct 230 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTC 171 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 170 TTCACAAAGATCTGCAT 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419815620004284