Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1566 129 1e-24 seq43461 102 2e-16 >seq1566 Length=12574 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||| |||||||| || |||||| || ||| ||| || || | || |||||| Sbjct 383 CACCCCTTTGCTGACAGGAGAGCCCTCATACGTCTCGTACGGTCCCTGCTCCTTGGCCAG 442 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | |||||| | || ||||| | ||||| || |||||||||||| || ||||| | | Sbjct 443 TTCACAGCTGGCTTCCAGGGCACCATAGTAAATAGTCTCGAAGATCTGCTGGTTCAAG-C 501 Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || |||||| | | ||||||| | ||||| ||||| | || ||||| |||| Sbjct 502 GCTGGGCCTCGGGACTCTCGAAGGGGTACCTCATCAGGATGAAAGCATCCGCCAGGCCCT 561 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||||||||||||||||||| | || |||||||||||||| Sbjct 562 GCACGCCGATGCCGATGGGACGATGGCGCTTGTTGGAGCG 601 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || || ||||||||||| |||||| || |||| | |||| Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| | || || | ||| ||||||| ||| | ||||| ||| Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||| | |||| ||| ||||| Sbjct 4943 TCCAGGTAAATGGCGAAGGCCCCGGG 4968 Score = 104 bits (114), Expect = 4e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| || || || ||||| || || ||||| || |||| Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| |||| |||||||| ||||||||||| |||| |||| Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007 Query 244824 CCCCGGTCTC 244833 |||||||| Sbjct 3008 TGCCGGTCTC 3017 >seq43461 Length=23750 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | |||| ||||| ||||||| || ||||| ||| Sbjct 23142 ACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATG 23201 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| ||||| |||||||||||||| |||| || || Sbjct 23202 GACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGG 23261 Query 244217 CTGTTCCTCACGCCGT 244232 ||||| || | ||||| Sbjct 23262 CTGTTTCTGAGGCCGT 23277 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 244103 AACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCC 244162 |||||||| || || || | |||| ||||| ||||||| || ||||| ||| ||| Sbjct 23298 AACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTCG 23357 Query 244163 GTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTC 244222 |||||||||| ||||| ||||| |||||||||||||| |||| || || ||||| Sbjct 23358 TTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGTTT 23417 Query 244223 CTCACGCCGT 244232 || ||||||| Sbjct 23418 CTGACGCCGT 23427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943604303430320