Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1566 129 1e-24
seq43461 102 2e-16
>seq1566
Length=12574
Score = 129 bits (142), Expect = 1e-24
Identities = 162/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377
|| ||| |||||||| || |||||| || ||| ||| || || | || ||||||
Sbjct 383 CACCCCTTTGCTGACAGGAGAGCCCTCATACGTCTCGTACGGTCCCTGCTCCTTGGCCAG 442
Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437
| |||||| | || ||||| | ||||| || |||||||||||| || ||||| | |
Sbjct 443 TTCACAGCTGGCTTCCAGGGCACCATAGTAAATAGTCTCGAAGATCTGCTGGTTCAAG-C 501
Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496
|| |||||| | | ||||||| | ||||| ||||| | || ||||| ||||
Sbjct 502 GCTGGGCCTCGGGACTCTCGAAGGGGTACCTCATCAGGATGAAAGCATCCGCCAGGCCCT 561
Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536
||||||||||||||||||| | || ||||||||||||||
Sbjct 562 GCACGCCGATGCCGATGGGACGATGGCGCTTGTTGGAGCG 601
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062
|| |||| ||||||||| || || ||||||||||| |||||| || |||| | ||||
Sbjct 4823 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCTAAGAAGAGATCTCTGGCTCGCTGC 4882
Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122
|| ||| |||||||||||| | || || | ||| ||||||| ||| | ||||| |||
Sbjct 4883 TCCTCCTTCCCAGTGTTCTTCTTTAGGTCAAGAAACTCAAAGATGTCCAGATGCCACGGC 4942
Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148
|||| ||| | |||| ||| |||||
Sbjct 4943 TCCAGGTAAATGGCGAAGGCCCCGGG 4968
Score = 104 bits (114), Expect = 4e-17
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
||||||| ||| | ||||||||| || || || ||||| || || ||||| || ||||
Sbjct 2888 CCACCTCATCCTTGCTGGTGTACTCCACGATTTCAGTGCATAGATTGCTGCATTTAATGG 2947
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
| ||||||| ||| || ||| |||| |||||||| ||||||||||| |||| ||||
Sbjct 2948 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGACCATGTAGGGTG 3007
Query 244824 CCCCGGTCTC 244833
||||||||
Sbjct 3008 TGCCGGTCTC 3017
>seq43461
Length=23750
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||| |||||||| || || || | |||| ||||| ||||||| || ||||| |||
Sbjct 23142 ACCTGGAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATG 23201
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
||| |||||||||| ||||| ||||| |||||||||||||| |||| || ||
Sbjct 23202 GACTCGTTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGG 23261
Query 244217 CTGTTCCTCACGCCGT 244232
||||| || | |||||
Sbjct 23262 CTGTTTCTGAGGCCGT 23277
Score = 100 bits (110), Expect = 5e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 244103 AACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCC 244162
|||||||| || || || | |||| ||||| ||||||| || ||||| ||| |||
Sbjct 23298 AACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCAATGGACTCG 23357
Query 244163 GTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTC 244222
|||||||||| ||||| ||||| |||||||||||||| |||| || || |||||
Sbjct 23358 TTGTTGCCCAGGATCTGGGCCGTCGAAGCAGTCGGCATGGGAGACATGAGGAGGCTGTTT 23417
Query 244223 CTCACGCCGT 244232
|| |||||||
Sbjct 23418 CTGACGCCGT 23427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943604303430320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |