Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020 14-06-25] 62,257 sequences; 1,065,782,791 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq27582 122 2e-22 seq40441 118 2e-21 >seq27582 Length=3938 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| || |||||||||||| Sbjct 2809 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCT 2868 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||| | ||| ||| || || ||||| || ||| Sbjct 2869 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2928 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || ||||| || || || | || || | || || ||||| ||||| ||| Sbjct 2929 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 2988 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||| Sbjct 2989 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || | || | |||| || || || || || |||| Sbjct 3018 CATG-CCACCTCTGAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGT 3076 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||||||||| | || || || || |||||||| | ||| ||| | Sbjct 3077 CGGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAG 3136 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || |||||||| || || ||||| || || || | || || | | Sbjct 3137 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCT 3196 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 3197 CAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| | |||||||||||||| | || || || || ||| Sbjct 3286 TCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAG 3345 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| || || ||||| || |||||||| || || ||||| || Sbjct 3346 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 3405 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| || Sbjct 3406 TCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 3465 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3466 AAGATCTGCAT 3476 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| | |||||||||||||| | || || || || ||| Sbjct 3514 TCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAG 3573 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| || || ||||| || |||||||| || || ||||| || Sbjct 3574 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 3633 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 3634 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 3693 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3694 AAGATCTGCAT 3704 >seq40441 Length=3214 Score = 118 bits (130), Expect = 2e-21 Identities = 171/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || |||||||| | ||| || || ||||| || |||| Sbjct 384 CATG-CCACCCCTCAGGCGCAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 326 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || ||||| | || || || ||||||||||| | ||| || || Sbjct 325 CAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---AT 269 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || |||||||| || || ||||| || || || | || || | Sbjct 268 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGG 209 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || |||||||| ||||| || ||||| ||||| || || ||||||||| || Sbjct 208 GCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 150 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || || ||||| | || || || |||||| Sbjct 800 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAG 741 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| ||||| ||||| || |||||||| || || |||||||| Sbjct 740 ATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 681 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| || Sbjct 680 TCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 621 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 620 AAGATCTGCAT 610 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || || |||| ||| || || ||||| || |||| Sbjct 612 CATG-CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 554 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || ||||| | || || || ||||||||||| | ||| || || Sbjct 553 CAGACAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---AT 497 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || |||||||| || || ||||| || || || | || || | Sbjct 496 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGG 437 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 436 GCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178713427655246