Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Buceros_20rhinoceros_20silvestris_20[refseq_20GCF_5F000710305.1_2020
14-06-25] 62,257 sequences; 1,065,782,791 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq27582 125 7e-24
seq40441 114 1e-20
>seq27582
Length=3938
Score = 125 bits (138), Expect = 7e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || ||||||||||| | | |||||| ||||||| |||||||||||
Sbjct 3280 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3339
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| |||||| ||||||||||| ||||| || || || || || |||
Sbjct 3340 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3399
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || || ||||| | ||| | |||||||| |||| ||
Sbjct 3400 ACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 3459
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 3460 TTCACAAAGATCTGCAT 3476
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||||| |||||
Sbjct 2809 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCT 2868
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| ||||||||||| ||||| || ||
Sbjct 2869 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2928
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 2929 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 2988
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 2989 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3020
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | || | ||| || || || ||||||||||| || | | ||||| |||||
Sbjct 3037 AGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCT 3096
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| || |||||||| ||||| || ||
Sbjct 3097 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 3156
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || ||||| | ||| | |||
Sbjct 3157 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTC 3216
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 3217 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3248
Score = 122 bits (134), Expect = 9e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || ||||||||||| | | |||||| ||||||| |||||||||||
Sbjct 3508 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCA 3567
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| |||||| ||||||||||| ||||| || || || || || |||
Sbjct 3568 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3627
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || || || || | || | ||||||||| |||| ||
Sbjct 3628 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3687
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| || || || ||||| ||
Sbjct 3688 TTCACAAAGATCTGCATGTT 3707
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||||| | |||
Sbjct 2353 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 2412
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| ||||||||||| ||||| || ||
Sbjct 2413 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 2472
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 2473 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 2532
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 2533 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2564
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||| || | |||
Sbjct 2581 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCT 2640
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| || |||||||| ||||| || ||
Sbjct 2641 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 2700
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || ||||| | ||| | |||
Sbjct 2701 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGAGTGATAGTC 2760
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 2761 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2792
>seq40441
Length=3214
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||| || | |||
Sbjct 365 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 306
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| ||||| ||||| ||||| || ||
Sbjct 305 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 246
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 245 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTC 186
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449
||||| |||| || || || || || |||||||| ||
Sbjct 185 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTGAT 148
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || |||| || || || || || |||||||| || | | ||| || | |||
Sbjct 593 AGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 534
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| ||||| ||||| ||||| || ||
Sbjct 533 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 474
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 473 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGCGTGATGGTC 414
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 413 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 382
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||| || | |||
Sbjct 821 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 762
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| ||||| || || ||||| || ||
Sbjct 761 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCC 702
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | || |||| | || ||||| | || | ||||
Sbjct 701 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTAGGCTCAACTTCCAGGGTGATGGTC 642
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 641 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499255970171080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |